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A thorough evaluation of the Language Environment Analysis (LENA) system.
Cristia A, Lavechin M, Scaff C, Soderstrom M, Rowland C, Räsänen O, Bunce J, Bergelson E. Cristia A, et al. Behav Res Methods. 2021 Apr;53(2):467-486. doi: 10.3758/s13428-020-01393-5. Behav Res Methods. 2021. PMID: 32728916 Free PMC article.
In the previous decade, dozens of studies involving thousands of children across several research disciplines have made use of a combined daylong audio-recorder and automated algorithmic analysis called the LENA(R) system, which aims to assess children's language …
In the previous decade, dozens of studies involving thousands of children across several research disciplines have made use of a combined da …
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons.
Lagkouvardos I, Fischer S, Kumar N, Clavel T. Lagkouvardos I, et al. PeerJ. 2017 Jan 11;5:e2836. doi: 10.7717/peerj.2836. eCollection 2017. PeerJ. 2017. PMID: 28097056 Free PMC article.
Among available pipeline options for high-throughput 16S rRNA gene analysis, the R programming language and software environment for statistical computing stands out for its power and increased flexibility, and the possibility to adhere to most …
Among available pipeline options for high-throughput 16S rRNA gene analysis, the R programming language and software enviro …
Cluster Analysis of Untargeted Metabolomic Experiments.
Heinemann J. Heinemann J. Methods Mol Biol. 2019;1859:275-285. doi: 10.1007/978-1-4939-8757-3_16. Methods Mol Biol. 2019. PMID: 30421236
We will demonstrate how to format untargeted mass spectrometry data for import into R, a programming language and software environment for statistical computing (R Development Core Team. R: A language and environment …
We will demonstrate how to format untargeted mass spectrometry data for import into R, a programming language and software …
cocor: a comprehensive solution for the statistical comparison of correlations.
Diedenhofen B, Musch J. Diedenhofen B, et al. PLoS One. 2015 Apr 2;10(3):e0121945. doi: 10.1371/journal.pone.0121945. eCollection 2015. PLoS One. 2015. PMID: 25835001 Free PMC article.
To close this gap, we introduce cocor, a free software package for the R programming language. The cocor package covers a broad range of tests including the comparisons of independent and dependent correlations with either overlapping or nonoverlapping variables. Th …
To close this gap, we introduce cocor, a free software package for the R programming language. The cocor package covers a broa …
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.
Sipos B, Massingham T, Jordan GE, Goldman N. Sipos B, et al. BMC Bioinformatics. 2011 Apr 19;12:104. doi: 10.1186/1471-2105-12-104. BMC Bioinformatics. 2011. PMID: 21504561 Free PMC article.
This calls for an extensible simulation framework written in a high-level functional language, offering new functionality and making it easy to incorporate further complexity. RESULTS: PhyloSim is an extensible framework for the Monte Carlo simulation of sequence evolution …
This calls for an extensible simulation framework written in a high-level functional language, offering new functionality and making …
Data workflows and visualization in support of surveillance practice.
Gustafsson W, Dórea FC, Widgren S, Frössling J, Vidal G, Kim H, Cha W, Comin A, Rodriguez Ewerlöf I, Rosendal T. Gustafsson W, et al. Front Vet Sci. 2023 Feb 9;10:1129863. doi: 10.3389/fvets.2023.1129863. eCollection 2023. Front Vet Sci. 2023. PMID: 36846250 Free PMC article.
Important components of this work include: data access, development environment, computational resources and cloud-based management. The development environment relies on Git for code collaboration and version control and the R language for statisti …
Important components of this work include: data access, development environment, computational resources and cloud-based management. …
Pharmacogenomics of Leukotriene Modifiers: A Systematic Review and Meta-Analysis.
Zhao Y, Zhang X, Han C, Cai Y, Li S, Hu X, Wu C, Guan X, Lu C, Nie X. Zhao Y, et al. J Pers Med. 2022 Jun 29;12(7):1068. doi: 10.3390/jpm12071068. J Pers Med. 2022. PMID: 35887565 Free PMC article.
Pharmacogenomics/genetics studies of patients with asthma using LTMs with or without other anti-asthmatic drugs were included. Statistical tests of the meta-analysis were performed with Review Manager (Revman, version 5.4, The Cochrane Collaboration, Copenhagen, Denmark) a …
Pharmacogenomics/genetics studies of patients with asthma using LTMs with or without other anti-asthmatic drugs were included. Statistica …
Interpreting the results of clinical trials, embracing uncertainty: A Bayesian approach.
Frost SA, Alexandrou E, Schulz L, Aneman A. Frost SA, et al. Acta Anaesthesiol Scand. 2021 Feb;65(2):146-150. doi: 10.1111/aas.13725. Epub 2020 Oct 24. Acta Anaesthesiol Scand. 2021. PMID: 33051864 Review.
Most clinical trials use null hypothesis significance testing with frequentist statistical inference to report P values and confidence intervals for effect estimates. ...The use of Bayesian statistics is introduced in this paper for a hypothetical sepsis trial with worked …
Most clinical trials use null hypothesis significance testing with frequentist statistical inference to report P values and confidenc …
Statistical models for assessing agreement for quantitative data with heterogeneous random raters and replicate measurements.
Ekstrøm CT, Carstensen B. Ekstrøm CT, et al. Int J Biostat. 2024 Feb 22. doi: 10.1515/ijb-2023-0037. Online ahead of print. Int J Biostat. 2024. PMID: 38379532
R package version 1.22, R Core Team. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2012]....
R package version 1.22, R Core Team. R: a language and environment for statistical computing …
pROC: an open-source package for R and S+ to analyze and compare ROC curves.
Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez JC, Müller M. Robin X, et al. BMC Bioinformatics. 2011 Mar 17;12:77. doi: 10.1186/1471-2105-12-77. BMC Bioinformatics. 2011. PMID: 21414208 Free PMC article.
RESULTS: With data previously imported into the R or S+ environment, the pROC package builds ROC curves and includes functions for computing confidence intervals, statistical tests for comparing total or partial area under the curve or the operating po …
RESULTS: With data previously imported into the R or S+ environment, the pROC package builds ROC curves and includes functions …
42 results