Rätsch G - Search Results

1

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients.

Kahles A, Lehmann KV, Toussaint NC, Hüser M, Stark SG, Sachsenberg T, Stegle O, Kohlbacher O, Sander C; Cancer Genome Atlas Research Network; Rätsch G. Kahles A, et al. Among authors: ratsch g. Cancer Cell. 2018 Aug 13;34(2):211-224.e6. doi: 10.1016/j.ccell.2018.07.001. Epub 2018 Aug 2. Cancer Cell. 2018. PMID: 30078747 Free PMC article.

2

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.

Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Rätsch G, Weigel D. Laubinger S, et al. Among authors: ratsch g. Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8795-800. doi: 10.1073/pnas.0802493105. Epub 2008 Jun 12. Proc Natl Acad Sci U S A. 2008. PMID: 18550839 Free PMC article.

3

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.

Laubinger S, Zeller G, Henz SR, Sachsenberg T, Widmer CK, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D. Laubinger S, et al. Among authors: ratsch g. Genome Biol. 2008;9(7):R112. doi: 10.1186/gb-2008-9-7-r112. Epub 2008 Jul 9. Genome Biol. 2008. PMID: 18613972 Free PMC article.

4

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays.

Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S. Zeller G, et al. Among authors: ratsch g. Plant J. 2009 Jun;58(6):1068-82. doi: 10.1111/j.1365-313X.2009.03835.x. Epub 2009 Feb 13. Plant J. 2009. PMID: 19222804 Free article.

5

KIRMES: kernel-based identification of regulatory modules in euchromatic sequences.

Schultheiss SJ, Busch W, Lohmann JU, Kohlbacher O, Rätsch G. Schultheiss SJ, et al. Among authors: ratsch g. Bioinformatics. 2009 Aug 15;25(16):2126-33. doi: 10.1093/bioinformatics/btp278. Epub 2009 Apr 23. Bioinformatics. 2009. PMID: 19389732 Free PMC article.

6

Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.

Laubinger S, Zeller G, Henz SR, Buechel S, Sachsenberg T, Wang JW, Rätsch G, Weigel D. Laubinger S, et al. Among authors: ratsch g. Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17466-73. doi: 10.1073/pnas.1012891107. Epub 2010 Sep 24. Proc Natl Acad Sci U S A. 2010. PMID: 20870966 Free PMC article.

7

Inferring latent task structure for Multitask Learning by Multiple Kernel Learning.

Widmer C, Toussaint NC, Altun Y, Rätsch G. Widmer C, et al. Among authors: ratsch g. BMC Bioinformatics. 2010 Oct 26;11 Suppl 8(Suppl 8):S5. doi: 10.1186/1471-2105-11-S8-S5. BMC Bioinformatics. 2010. PMID: 21034430 Free PMC article.

8

Exploiting physico-chemical properties in string kernels.

Toussaint NC, Widmer C, Kohlbacher O, Rätsch G. Toussaint NC, et al. Among authors: ratsch g. BMC Bioinformatics. 2010 Oct 26;11 Suppl 8(Suppl 8):S7. doi: 10.1186/1471-2105-11-S8-S7. BMC Bioinformatics. 2010. PMID: 21034432 Free PMC article.

9

RNA-Seq read alignments with PALMapper.

Jean G, Kahles A, Sreedharan VT, De Bona F, Rätsch G. Jean G, et al. Among authors: ratsch g. Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.6. doi: 10.1002/0471250953.bi1106s32. Curr Protoc Bioinformatics. 2010. PMID: 21154708

10

Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R. Gan X, et al. Among authors: ratsch g. Nature. 2011 Aug 28;477(7365):419-23. doi: 10.1038/nature10414. Nature. 2011. PMID: 21874022 Free PMC article.

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