R01 AI081062/AI/NIAID NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2007	1
2008	1
2010	7
2011	3
2012	4
2013	3
2014	4
2015	5
2016	11
2017	5
2018	1
2019	4
2020	4
2021	3
2022	1

1

COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning.

Ong E, Wong MU, Huffman A, He Y. Ong E, et al. Front Immunol. 2020 Jul 3;11:1581. doi: 10.3389/fimmu.2020.01581. eCollection 2020. Front Immunol. 2020. PMID: 32719684 Free PMC article.

2

Emerging vaccine informatics.

He Y, Rappuoli R, De Groot AS, Chen RT. He Y, et al. J Biomed Biotechnol. 2010;2010:218590. doi: 10.1155/2010/218590. Epub 2011 Jun 15. J Biomed Biotechnol. 2010. PMID: 21772787 Free PMC article. Review.

3

Databases and in silico tools for vaccine design.

He Y, Xiang Z. He Y, et al. Methods Mol Biol. 2013;993:115-27. doi: 10.1007/978-1-62703-342-8_8. Methods Mol Biol. 2013. PMID: 23568467 Review.

4

Cwl0971, a novel peptidoglycan hydrolase, plays pleiotropic roles in Clostridioides difficile R20291.

Zhu D, Patabendige HMLW, Tomlinson BR, Wang S, Hussain S, Flores D, He Y, Shaw LN, Sun X. Zhu D, et al. Environ Microbiol. 2021 Sep;23(9):5222-5238. doi: 10.1111/1462-2920.15529. Epub 2021 Apr 24. Environ Microbiol. 2021. PMID: 33893759

5

Ontology-supported research on vaccine efficacy, safety and integrative biological networks.

He Y. He Y. Expert Rev Vaccines. 2014 Jul;13(7):825-41. doi: 10.1586/14760584.2014.923762. Epub 2014 Jun 7. Expert Rev Vaccines. 2014. PMID: 24909153 Free PMC article. Review.

6

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.

He Y, Xiang Z, Zheng J, Lin Y, Overton JA, Ong E. He Y, et al. J Biomed Semantics. 2018 Jan 12;9(1):3. doi: 10.1186/s13326-017-0169-2. J Biomed Semantics. 2018. PMID: 29329592 Free PMC article. Review.

7

COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning.

Ong E, Wong MU, Huffman A, He Y. Ong E, et al. bioRxiv. 2020 Mar 21:2020.03.20.000141. doi: 10.1101/2020.03.20.000141. Preprint. bioRxiv. 2020. PMID: 32511333 Free PMC article. Updated.

8

VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms.

Berke K, Sun P, Ong E, Sanati N, Huffman A, Brunson T, Loney F, Ostrow J, Racz R, Zhao B, Xiang Z, Masci AM, Zheng J, Wu G, He Y. Berke K, et al. Front Immunol. 2021 Mar 12;12:639491. doi: 10.3389/fimmu.2021.639491. eCollection 2021. Front Immunol. 2021. PMID: 33777032 Free PMC article.

9

The Ontology for Biomedical Investigations.

Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J. Bandrowski A, et al. PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016. PLoS One. 2016. PMID: 27128319 Free PMC article.

10

Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.

Ong E, Cooke MF, Huffman A, Xiang Z, Wong MU, Wang H, Seetharaman M, Valdez N, He Y. Ong E, et al. Nucleic Acids Res. 2021 Jul 2;49(W1):W671-W678. doi: 10.1093/nar/gkab279. Nucleic Acids Res. 2021. PMID: 34009334 Free PMC article.

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