R01 GM020861/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
1998	1
2003	1
2004	1
2005	1
2007	1
2008	3
2009	4
2010	3
2011	1
2021	0

1

New information content in RNA base pairing deduced from quantitative analysis of high-resolution structures.

Olson WK, Esguerra M, Xin Y, Lu XJ. Olson WK, et al. Methods. 2009 Mar;47(3):177-86. doi: 10.1016/j.ymeth.2008.12.003. Epub 2009 Jan 14. Methods. 2009. PMID: 19150407 Free PMC article. Review.

2

DNA architecture, deformability, and nucleosome positioning.

Xu F, Olson WK. Xu F, et al. J Biomol Struct Dyn. 2010 Jun;27(6):725-39. doi: 10.1080/073911010010524943. J Biomol Struct Dyn. 2010. PMID: 20232929 Free PMC article.

3

How stiff is DNA?

Zheng G, Czapla L, Srinivasan AR, Olson WK. Zheng G, et al. Phys Chem Chem Phys. 2010 Feb 14;12(6):1399-406. doi: 10.1039/b916183j. Epub 2009 Dec 23. Phys Chem Chem Phys. 2010. PMID: 20119618 Free PMC article.

4

nuScore: a web-interface for nucleosome positioning predictions.

Tolstorukov MY, Choudhary V, Olson WK, Zhurkin VB, Park PJ. Tolstorukov MY, et al. Bioinformatics. 2008 Jun 15;24(12):1456-8. doi: 10.1093/bioinformatics/btn212. Epub 2008 Apr 29. Bioinformatics. 2008. PMID: 18445607 Free PMC article.

5

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures.

Lu XJ, Olson WK. Lu XJ, et al. Nat Protoc. 2008;3(7):1213-27. doi: 10.1038/nprot.2008.104. Nat Protoc. 2008. PMID: 18600227 Free PMC article.

6

Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA.

Srinivasan AR, Sauers RR, Fenley MO, Boschitsch AH, Matsumoto A, Colasanti AV, Olson WK. Srinivasan AR, et al. Biophys Rev. 2009 Mar 1;1(1):13-20. doi: 10.1007/s12551-008-0003-2. Biophys Rev. 2009. PMID: 21218180 Free PMC article.

7

Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids.

Ge W, Schneider B, Olson WK. Ge W, et al. Biophys J. 2005 Feb;88(2):1166-90. doi: 10.1529/biophysj.104.043612. Epub 2004 Oct 22. Biophys J. 2005. PMID: 15501936 Free PMC article.

8

Structure, dynamics, and branch migration of a DNA Holliday junction: a single-molecule fluorescence and modeling study.

Karymov MA, Chinnaraj M, Bogdanov A, Srinivasan AR, Zheng G, Olson WK, Lyubchenko YL. Karymov MA, et al. Biophys J. 2008 Nov 1;95(9):4372-83. doi: 10.1529/biophysj.108.135103. Epub 2008 Jul 25. Biophys J. 2008. PMID: 18658216 Free PMC article.

9

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Lu XJ, Olson WK. Lu XJ, et al. Nucleic Acids Res. 2003 Sep 1;31(17):5108-21. doi: 10.1093/nar/gkg680. Nucleic Acids Res. 2003. PMID: 12930962 Free PMC article.

10

Nucleic-acid structural deformability deduced from anisotropic displacement parameters.

Peckham HE, Olson WK. Peckham HE, et al. Biopolymers. 2011 Apr;95(4):254-69. doi: 10.1002/bip.21570. Epub 2010 Nov 29. Biopolymers. 2011. PMID: 21280021 Free PMC article.

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