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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2000 1
2002 4
2003 8
2004 2
2005 1
2006 2
2007 2
2008 2
2009 7
2010 8
2011 6
2012 2
2013 5
2014 1
2015 6
2016 7
2017 4
2018 4
2019 7
2020 7
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82 results
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Page 1
Using Genome-scale Models to Predict Biological Capabilities.
O'Brien EJ, Monk JM, Palsson BO. O'Brien EJ, et al. Cell. 2015 May 21;161(5):971-987. doi: 10.1016/j.cell.2015.05.019. Cell. 2015. PMID: 26000478 Free PMC article. Review.
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods.
Lewis NE, Nagarajan H, Palsson BO. Lewis NE, et al. Nat Rev Microbiol. 2012 Feb 27;10(4):291-305. doi: 10.1038/nrmicro2737. Nat Rev Microbiol. 2012. PMID: 22367118 Free PMC article. Review.
Recon3D enables a three-dimensional view of gene variation in human metabolism.
Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlić A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO. Brunk E, et al. Nat Biotechnol. 2018 Mar;36(3):272-281. doi: 10.1038/nbt.4072. Epub 2018 Feb 19. Nat Biotechnol. 2018. PMID: 29457794 Free PMC article.
What is flux balance analysis?
Orth JD, Thiele I, Palsson BØ. Orth JD, et al. Nat Biotechnol. 2010 Mar;28(3):245-8. doi: 10.1038/nbt.1614. Nat Biotechnol. 2010. PMID: 20212490 Free PMC article.
iML1515, a knowledgebase that computes Escherichia coli traits.
Monk JM, Lloyd CJ, Brunk E, Mih N, Sastry A, King Z, Takeuchi R, Nomura W, Zhang Z, Mori H, Feist AM, Palsson BO. Monk JM, et al. Nat Biotechnol. 2017 Oct 11;35(10):904-908. doi: 10.1038/nbt.3956. Nat Biotechnol. 2017. PMID: 29020004 Free PMC article. No abstract available.
A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.
Orth JD, Conrad TM, Na J, Lerman JA, Nam H, Feist AM, Palsson BØ. Orth JD, et al. Mol Syst Biol. 2011 Oct 11;7:535. doi: 10.1038/msb.2011.65. Mol Syst Biol. 2011. PMID: 21988831 Free PMC article.
A protocol for generating a high-quality genome-scale metabolic reconstruction.
Thiele I, Palsson BØ. Thiele I, et al. Nat Protoc. 2010 Jan;5(1):93-121. doi: 10.1038/nprot.2009.203. Epub 2010 Jan 7. Nat Protoc. 2010. PMID: 20057383 Free PMC article.
Adaptive laboratory evolution of Escherichia coli under acid stress.
Du B, Olson CA, Sastry AV, Fang X, Phaneuf PV, Chen K, Wu M, Szubin R, Xu S, Gao Y, Hefner Y, Feist AM, Palsson BO. Du B, et al. Microbiology (Reading). 2020 Feb;166(2):141-148. doi: 10.1099/mic.0.000867. Epub 2019 Oct 18. Microbiology (Reading). 2020. PMID: 31625833
Cellular responses to reactive oxygen species are predicted from molecular mechanisms.
Yang L, Mih N, Anand A, Park JH, Tan J, Yurkovich JT, Monk JM, Lloyd CJ, Sandberg TE, Seo SW, Kim D, Sastry AV, Phaneuf P, Gao Y, Broddrick JT, Chen K, Heckmann D, Szubin R, Hefner Y, Feist AM, Palsson BO. Yang L, et al. Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14368-14373. doi: 10.1073/pnas.1905039116. Epub 2019 Jul 3. Proc Natl Acad Sci U S A. 2019. PMID: 31270234 Free PMC article.
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.
Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ. Feist AM, et al. Mol Syst Biol. 2007;3:121. doi: 10.1038/msb4100155. Epub 2007 Jun 26. Mol Syst Biol. 2007. PMID: 17593909 Free PMC article.
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