R01 GM066049/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2003	1
2005	1
2006	1
2008	2
2009	5
2021	0

1

Protein binding site prediction using an empirical scoring function.

Liang S, Zhang C, Liu S, Zhou Y. Liang S, et al. Nucleic Acids Res. 2006 Aug 7;34(13):3698-707. doi: 10.1093/nar/gkl454. Print 2006. Nucleic Acids Res. 2006. PMID: 16893954 Free PMC article.

2

Refining near-native protein-protein docking decoys by local resampling and energy minimization.

Liang S, Wang G, Zhou Y. Liang S, et al. Proteins. 2009 Aug 1;76(2):309-16. doi: 10.1002/prot.22343. Proteins. 2009. PMID: 19156819 Free PMC article.

3

Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.

Zhou H, Zhou Y. Zhou H, et al. Proteins. 2005 Feb 1;58(2):321-8. doi: 10.1002/prot.20308. Proteins. 2005. PMID: 15523666 Free PMC article.

4

Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations.

Lei H, Wu C, Wang ZX, Zhou Y, Duan Y. Lei H, et al. J Chem Phys. 2008 Jun 21;128(23):235105. doi: 10.1063/1.2937135. J Chem Phys. 2008. PMID: 18570534 Free PMC article.

5

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network.

Faraggi E, Xue B, Zhou Y. Faraggi E, et al. Proteins. 2009 Mar;74(4):847-56. doi: 10.1002/prot.22193. Proteins. 2009. PMID: 18704931 Free PMC article.

6

Consensus scoring for enriching near-native structures from protein-protein docking decoys.

Liang S, Meroueh SO, Wang G, Qiu C, Zhou Y. Liang S, et al. Proteins. 2009 May 1;75(2):397-403. doi: 10.1002/prot.22252. Proteins. 2009. PMID: 18831053 Free PMC article.

7

An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles.

Xu B, Yang Y, Liang H, Zhou Y. Xu B, et al. Proteins. 2009 Aug 15;76(3):718-30. doi: 10.1002/prot.22384. Proteins. 2009. PMID: 19274740 Free PMC article.

8

Folding mechanisms of individual beta-hairpins in a Go model of Pin1 WW domain by all-atom molecular dynamics simulations.

Luo Z, Ding J, Zhou Y. Luo Z, et al. J Chem Phys. 2008 Jun 14;128(22):225103. doi: 10.1063/1.2936832. J Chem Phys. 2008. PMID: 18554060 Free PMC article.

9

Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden-Markov-model-based method.

Zhou H, Zhou Y. Zhou H, et al. Protein Sci. 2003 Jul;12(7):1547-55. doi: 10.1110/ps.0305103. Protein Sci. 2003. PMID: 12824500 Free PMC article.

10

Predicting residue-residue contact maps by a two-layer, integrated neural-network method.

Xue B, Faraggi E, Zhou Y. Xue B, et al. Proteins. 2009 Jul;76(1):176-83. doi: 10.1002/prot.22329. Proteins. 2009. PMID: 19137600 Free PMC article.

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