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Year Number of Results
2004 1
2006 1
2007 2
2008 3
2009 6
2011 1
2020 0
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Page 1
Diversifying selective pressure on influenza B virus hemagglutinin.
Shen J, Kirk BD, Ma J, Wang Q. Shen J, et al. J Med Virol. 2009 Jan;81(1):114-24. doi: 10.1002/jmv.21335. J Med Virol. 2009. PMID: 19031453 Free PMC article.
New advances in normal mode analysis of supermolecular complexes and applications to structural refinement.
Ma J. Ma J. Curr Protein Pept Sci. 2004 Apr;5(2):119-23. doi: 10.2174/1389203043486892. Curr Protein Pept Sci. 2004. PMID: 15078222 Free PMC article. Review.
OPUS-Rota: a fast and accurate method for side-chain modeling.
Lu M, Dousis AD, Ma J. Lu M, et al. Protein Sci. 2008 Sep;17(9):1576-85. doi: 10.1110/ps.035022.108. Epub 2008 Jun 12. Protein Sci. 2008. PMID: 18556476 Free PMC article.
Normal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic models.
Lu M, Ma J. Lu M, et al. Arch Biochem Biophys. 2011 Apr 1;508(1):64-71. doi: 10.1016/j.abb.2010.12.031. Epub 2011 Jan 4. Arch Biochem Biophys. 2011. PMID: 21211510 Free PMC article.
Enhanced sampling in generalized ensemble with large gap of sampling parameter: case study in temperature space random walk.
Zhang C, Ma J. Zhang C, et al. J Chem Phys. 2009 May 21;130(19):194112. doi: 10.1063/1.3139192. J Chem Phys. 2009. PMID: 19466826 Free PMC article.
Explicit orientation dependence in empirical potentials and its significance to side-chain modeling.
Ma J. Ma J. Acc Chem Res. 2009 Aug 18;42(8):1087-96. doi: 10.1021/ar900009e. Acc Chem Res. 2009. PMID: 19445451 Free PMC article.
A New Method for Coarse-Grained Elastic Normal-Mode Analysis.
Lu M, Poon B, Ma J. Lu M, et al. J Chem Theory Comput. 2006;2(3):464-471. doi: 10.1021/ct050307u. J Chem Theory Comput. 2006. PMID: 21760758 Free PMC article.
Predicting protein folding cores by empirical potential functions.
Chen M, Dousis AD, Wu Y, Wittung-Stafshede P, Ma J. Chen M, et al. Arch Biochem Biophys. 2009 Mar 1;483(1):16-22. doi: 10.1016/j.abb.2008.12.011. Epub 2008 Dec 27. Arch Biochem Biophys. 2009. PMID: 19135974 Free PMC article.
OPUS-Dom: applying the folding-based method VECFOLD to determine protein domain boundaries.
Wu Y, Dousis AD, Chen M, Li J, Ma J. Wu Y, et al. J Mol Biol. 2009 Jan 30;385(4):1314-29. doi: 10.1016/j.jmb.2008.10.093. Epub 2008 Nov 10. J Mol Biol. 2009. PMID: 19026662 Free PMC article.
Simulation via direct computation of partition functions.
Zhang C, Ma J. Zhang C, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):036708. doi: 10.1103/PhysRevE.76.036708. Epub 2007 Sep 20. Phys Rev E Stat Nonlin Soft Matter Phys. 2007. PMID: 17930362 Free PMC article.
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