R01 GM071655/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2007	1
2009	2
2010	2
2011	2
2013	1
2015	2
2016	1
2017	1
2021	0

1

Biases in Illumina transcriptome sequencing caused by random hexamer priming.

Hansen KD, Brenner SE, Dudoit S. Hansen KD, et al. Nucleic Acids Res. 2010 Jul;38(12):e131. doi: 10.1093/nar/gkq224. Epub 2010 Apr 14. Nucleic Acids Res. 2010. PMID: 20395217 Free PMC article.

2

Conservation of an RNA regulatory map between Drosophila and mammals.

Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR. Brooks AN, et al. Genome Res. 2011 Feb;21(2):193-202. doi: 10.1101/gr.108662.110. Epub 2010 Oct 4. Genome Res. 2011. PMID: 20921232 Free PMC article.

3

The future of genome-based medicine.

Morris Q, Brenner SE, Listgarten J, Stegle O. Morris Q, et al. Pac Symp Biocomput. 2013:456-8. Pac Symp Biocomput. 2013. PMID: 23424151 Free PMC article. No abstract available.

4

The coupling of alternative splicing and nonsense-mediated mRNA decay.

Lareau LF, Brooks AN, Soergel DA, Meng Q, Brenner SE. Lareau LF, et al. Adv Exp Med Biol. 2007;623:190-211. doi: 10.1007/978-0-387-77374-2_12. Adv Exp Med Biol. 2007. PMID: 18380348 Review.

5

Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines.

Chhibber A, French CE, Yee SW, Gamazon ER, Theusch E, Qin X, Webb A, Papp AC, Wang A, Simmons CQ, Konkashbaev A, Chaudhry AS, Mitchel K, Stryke D, Ferrin TE, Weiss ST, Kroetz DL, Sadee W, Nickerson DA, Krauss RM, George AL, Schuetz EG, Medina MW, Cox NJ, Scherer SE, Giacomini KM, Brenner SE. Chhibber A, et al. Pharmacogenomics J. 2017 Mar;17(2):137-145. doi: 10.1038/tpj.2015.93. Epub 2016 Feb 9. Pharmacogenomics J. 2017. PMID: 26856248 Free PMC article.

6

Multiple breast cancer risk variants are associated with differential transcript isoform expression in tumors.

Caswell JL, Camarda R, Zhou AY, Huntsman S, Hu D, Brenner SE, Zaitlen N, Goga A, Ziv E. Caswell JL, et al. Hum Mol Genet. 2015 Dec 20;24(25):7421-31. doi: 10.1093/hmg/ddv432. Epub 2015 Oct 15. Hum Mol Genet. 2015. PMID: 26472073 Free PMC article.

7

Regulation of splicing factors by alternative splicing and NMD is conserved between kingdoms yet evolutionarily flexible.

Lareau LF, Brenner SE. Lareau LF, et al. Mol Biol Evol. 2015 Apr;32(4):1072-9. doi: 10.1093/molbev/msv002. Epub 2015 Jan 8. Mol Biol Evol. 2015. PMID: 25576366 Free PMC article.

8

Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members.

Blanchette M, Green RE, MacArthur S, Brooks AN, Brenner SE, Eisen MB, Rio DC. Blanchette M, et al. Mol Cell. 2009 Feb 27;33(4):438-49. doi: 10.1016/j.molcel.2009.01.022. Mol Cell. 2009. PMID: 19250905 Free PMC article.

9

Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans.

Brooks AN, Aspden JL, Podgornaia AI, Rio DC, Brenner SE. Brooks AN, et al. RNA. 2011 Oct;17(10):1884-94. doi: 10.1261/rna.2696311. Epub 2011 Aug 24. RNA. 2011. PMID: 21865603 Free PMC article.

10

Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila.

Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE. Hansen KD, et al. PLoS Genet. 2009 Jun;5(6):e1000525. doi: 10.1371/journal.pgen.1000525. Epub 2009 Jun 19. PLoS Genet. 2009. PMID: 19543372 Free PMC article.

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