R01 GM076570/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2007	1
2008	7
2009	7
2010	4
2011	6
2012	3
2013	1
2014	1
2021	0

1

Using views of Systems Biology Cloud: application for model building.

Ruebenacker O, Blinov M. Ruebenacker O, et al. Theory Biosci. 2011 Mar;130(1):45-54. doi: 10.1007/s12064-010-0108-6. Epub 2010 Aug 21. Theory Biosci. 2011. PMID: 20730508 Review.

2

Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling.

Creamer MS, Stites EC, Aziz M, Cahill JA, Tan CW, Berens ME, Han H, Bussey KJ, Von Hoff DD, Hlavacek WS, Posner RG. Creamer MS, et al. BMC Syst Biol. 2012 Aug 22;6:107. doi: 10.1186/1752-0509-6-107. BMC Syst Biol. 2012. PMID: 22913808 Free PMC article.

3

Phosphorylation site dynamics of early T-cell receptor signaling.

Chylek LA, Akimov V, Dengjel J, Rigbolt KT, Hu B, Hlavacek WS, Blagoev B. Chylek LA, et al. PLoS One. 2014 Aug 22;9(8):e104240. doi: 10.1371/journal.pone.0104240. eCollection 2014. PLoS One. 2014. PMID: 25147952 Free PMC article.

4

RuleBender: a visual interface for rule-based modeling.

Xu W, Smith AM, Faeder JR, Marai GE. Xu W, et al. Bioinformatics. 2011 Jun 15;27(12):1721-2. doi: 10.1093/bioinformatics/btr197. Epub 2011 Apr 14. Bioinformatics. 2011. PMID: 21493655 Free PMC article.

5

Guidelines for visualizing and annotating rule-based models.

Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. Chylek LA, et al. Mol Biosyst. 2011 Oct;7(10):2779-95. doi: 10.1039/c1mb05077j. Epub 2011 Jun 7. Mol Biosyst. 2011. PMID: 21647530 Free PMC article.

6

Molecular machines or pleiomorphic ensembles: signaling complexes revisited.

Mayer BJ, Blinov ML, Loew LM. Mayer BJ, et al. J Biol. 2009 Oct 16;8(9):81. doi: 10.1186/jbiol185. J Biol. 2009. PMID: 19835637 Free PMC article.

7

Integrating BioPAX pathway knowledge with SBML models.

Ruebenacker O, Moraru II, Schaff JC, Blinov ML. Ruebenacker O, et al. IET Syst Biol. 2009 Sep;3(5):317-28. doi: 10.1049/iet-syb.2009.0007. IET Syst Biol. 2009. PMID: 21028923

8

The Brucella TIR-like protein TcpB interacts with the death domain of MyD88.

Chaudhary A, Ganguly K, Cabantous S, Waldo GS, Micheva-Viteva SN, Nag K, Hlavacek WS, Tung CS. Chaudhary A, et al. Biochem Biophys Res Commun. 2012 Jan 6;417(1):299-304. doi: 10.1016/j.bbrc.2011.11.104. Epub 2011 Nov 29. Biochem Biophys Res Commun. 2012. PMID: 22155231 Free PMC article.

9

Modeling the effect of APC truncation on destruction complex function in colorectal cancer cells.

Barua D, Hlavacek WS. Barua D, et al. PLoS Comput Biol. 2013;9(9):e1003217. doi: 10.1371/journal.pcbi.1003217. Epub 2013 Sep 26. PLoS Comput Biol. 2013. PMID: 24086117 Free PMC article.

10

Modeling multivalent ligand-receptor interactions with steric constraints on configurations of cell-surface receptor aggregates.

Monine MI, Posner RG, Savage PB, Faeder JR, Hlavacek WS. Monine MI, et al. Biophys J. 2010 Jan 6;98(1):48-56. doi: 10.1016/j.bpj.2009.09.043. Biophys J. 2010. PMID: 20085718 Free PMC article.

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