R01 GM082209/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2007	1
2008	3
2009	4
2010	1
2012	4
2013	3
2015	1
2016	3
2018	1
2019	1
2022	0

1

Rational approaches to improving selectivity in drug design.

Huggins DJ, Sherman W, Tidor B. Huggins DJ, et al. J Med Chem. 2012 Feb 23;55(4):1424-44. doi: 10.1021/jm2010332. Epub 2012 Jan 12. J Med Chem. 2012. PMID: 22239221 Free PMC article. Review. No abstract available.

2

CHARMM: the biomolecular simulation program.

Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M. Brooks BR, et al. J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287. J Comput Chem. 2009. PMID: 19444816 Free PMC article. Review.

3

Machine Learning Identifies Chemical Characteristics That Promote Enzyme Catalysis.

Bonk BM, Weis JW, Tidor B. Bonk BM, et al. J Am Chem Soc. 2019 Mar 6;141(9):4108-4118. doi: 10.1021/jacs.8b13879. Epub 2019 Feb 21. J Am Chem Soc. 2019. PMID: 30761897 Free PMC article.

4

Rational design of thiolase substrate specificity for metabolic engineering applications.

Bonk BM, Tarasova Y, Hicks MA, Tidor B, Prather KLJ. Bonk BM, et al. Biotechnol Bioeng. 2018 Sep;115(9):2167-2182. doi: 10.1002/bit.26737. Epub 2018 Jun 29. Biotechnol Bioeng. 2018. PMID: 29877597 Free PMC article.

5

Exploiting Temporal Collateral Sensitivity in Tumor Clonal Evolution.

Zhao B, Sedlak JC, Srinivas R, Creixell P, Pritchard JR, Tidor B, Lauffenburger DA, Hemann MT. Zhao B, et al. Cell. 2016 Mar 24;165(1):234-246. doi: 10.1016/j.cell.2016.01.045. Epub 2016 Feb 25. Cell. 2016. PMID: 26924578 Free PMC article.

6

Charge Optimization Theory for Induced-Fit Ligands.

Shen Y, Gilson MK, Tidor B. Shen Y, et al. J Chem Theory Comput. 2012 Nov 13;8(11):4580-4592. doi: 10.1021/ct200931c. Epub 2012 Jun 17. J Chem Theory Comput. 2012. PMID: 23162383 Free PMC article.

7

Testing the substrate-envelope hypothesis with designed pairs of compounds.

Shen Y, Altman MD, Ali A, Nalam MN, Cao H, Rana TM, Schiffer CA, Tidor B. Shen Y, et al. ACS Chem Biol. 2013 Nov 15;8(11):2433-41. doi: 10.1021/cb400468c. Epub 2013 Sep 26. ACS Chem Biol. 2013. PMID: 23952265 Free PMC article.

8

Substrate envelope-designed potent HIV-1 protease inhibitors to avoid drug resistance.

Nalam MN, Ali A, Reddy GS, Cao H, Anjum SG, Altman MD, Yilmaz NK, Tidor B, Rana TM, Schiffer CA. Nalam MN, et al. Chem Biol. 2013 Sep 19;20(9):1116-24. doi: 10.1016/j.chembiol.2013.07.014. Epub 2013 Sep 5. Chem Biol. 2013. PMID: 24012370 Free PMC article.

9

A Fungal-Selective Cytochrome bc₁ Inhibitor Impairs Virulence and Prevents the Evolution of Drug Resistance.

Vincent BM, Langlois JB, Srinivas R, Lancaster AK, Scherz-Shouval R, Whitesell L, Tidor B, Buchwald SL, Lindquist S. Vincent BM, et al. Cell Chem Biol. 2016 Aug 18;23(8):978-991. doi: 10.1016/j.chembiol.2016.06.016. Epub 2016 Aug 11. Cell Chem Biol. 2016. PMID: 27524297 Free PMC article.

10

Additivity in the analysis and design of HIV protease inhibitors.

Jorissen RN, Reddy GS, Ali A, Altman MD, Chellappan S, Anjum SG, Tidor B, Schiffer CA, Rana TM, Gilson MK. Jorissen RN, et al. J Med Chem. 2009 Feb 12;52(3):737-54. doi: 10.1021/jm8009525. J Med Chem. 2009. PMID: 19193159 Free PMC article.

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