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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2007 1
2008 12
2009 16
2010 23
2011 11
2012 9
2013 6
2014 23
2015 5
2016 3
2017 4
2018 6
2019 4
2020 3
2021 0
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119 results
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Page 1
Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer.
Johnstone SE, Reyes A, Qi Y, Adriaens C, Hegazi E, Pelka K, Chen JH, Zou LS, Drier Y, Hecht V, Shoresh N, Selig MK, Lareau CA, Iyer S, Nguyen SC, Joyce EF, Hacohen N, Irizarry RA, Zhang B, Aryee MJ, Bernstein BE. Johnstone SE, et al. Cell. 2020 Sep 17;182(6):1474-1489.e23. doi: 10.1016/j.cell.2020.07.030. Epub 2020 Aug 24. Cell. 2020. PMID: 32841603
Salmon provides fast and bias-aware quantification of transcript expression.
Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Patro R, et al. Nat Methods. 2017 Apr;14(4):417-419. doi: 10.1038/nmeth.4197. Epub 2017 Mar 6. Nat Methods. 2017. PMID: 28263959 Free PMC article.
Tackling the widespread and critical impact of batch effects in high-throughput data.
Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, Johnson WE, Geman D, Baggerly K, Irizarry RA. Leek JT, et al. Nat Rev Genet. 2010 Oct;11(10):733-9. doi: 10.1038/nrg2825. Epub 2010 Sep 14. Nat Rev Genet. 2010. PMID: 20838408 Free PMC article. Review.
Gene set enrichment analysis made simple.
Irizarry RA, Wang C, Zhou Y, Speed TP. Irizarry RA, et al. Stat Methods Med Res. 2009 Dec;18(6):565-75. doi: 10.1177/0962280209351908. Stat Methods Med Res. 2009. PMID: 20048385 Free PMC article.
SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters.
Nakayama RT, Pulice JL, Valencia AM, McBride MJ, McKenzie ZM, Gillespie MA, Ku WL, Teng M, Cui K, Williams RT, Cassel SH, Qing H, Widmer CJ, Demetri GD, Irizarry RA, Zhao K, Ranish JA, Kadoch C. Nakayama RT, et al. Nat Genet. 2017 Nov;49(11):1613-1623. doi: 10.1038/ng.3958. Epub 2017 Sep 25. Nat Genet. 2017. PMID: 28945250 Free PMC article.
Increased methylation variation in epigenetic domains across cancer types.
Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, Feinberg AP. Hansen KD, et al. Nat Genet. 2011 Jun 26;43(8):768-75. doi: 10.1038/ng.865. Nat Genet. 2011. PMID: 21706001 Free PMC article.
Missing data and technical variability in single-cell RNA-sequencing experiments.
Hicks SC, Townes FW, Teng M, Irizarry RA. Hicks SC, et al. Biostatistics. 2018 Oct 1;19(4):562-578. doi: 10.1093/biostatistics/kxx053. Biostatistics. 2018. PMID: 29121214 Free PMC article.
Epigenetic memory in induced pluripotent stem cells.
Kim K, Doi A, Wen B, Ng K, Zhao R, Cahan P, Kim J, Aryee MJ, Ji H, Ehrlich LI, Yabuuchi A, Takeuchi A, Cunniff KC, Hongguang H, McKinney-Freeman S, Naveiras O, Yoon TJ, Irizarry RA, Jung N, Seita J, Hanna J, Murakami P, Jaenisch R, Weissleder R, Orkin SH, Weissman IL, Feinberg AP, Daley GQ. Kim K, et al. Nature. 2010 Sep 16;467(7313):285-90. doi: 10.1038/nature09342. Nature. 2010. PMID: 20644535 Free PMC article.
svaseq: removing batch effects and other unwanted noise from sequencing data.
Leek JT. Leek JT. Nucleic Acids Res. 2014 Dec 1;42(21):e161. doi: 10.1093/nar/gku864. Epub 2014 Oct 7. Nucleic Acids Res. 2014. PMID: 25294822 Free PMC article.
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA. Aryee MJ, et al. Bioinformatics. 2014 May 15;30(10):1363-9. doi: 10.1093/bioinformatics/btu049. Epub 2014 Jan 28. Bioinformatics. 2014. PMID: 24478339 Free PMC article.
119 results
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