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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2007 3
2008 13
2009 14
2010 16
2011 16
2012 8
2013 3
2014 4
2015 2
2016 2
2017 2
2018 6
2019 2
2020 0
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83 results
Results by year
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Page 1
A review of methods and databases for metagenomic classification and assembly.
Breitwieser FP, Lu J, Salzberg SL. Breitwieser FP, et al. Brief Bioinform. 2019 Jul 19;20(4):1125-1136. doi: 10.1093/bib/bbx120. Brief Bioinform. 2019. PMID: 29028872 Free PMC article. Review.
Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics.
Simner PJ, Miller HB, Breitwieser FP, Pinilla Monsalve G, Pardo CA, Salzberg SL, Sears CL, Thomas DL, Eberhart CG, Carroll KC. Simner PJ, et al. J Clin Microbiol. 2018 Aug 27;56(9):e00472-18. doi: 10.1128/JCM.00472-18. Print 2018 Sep. J Clin Microbiol. 2018. PMID: 29976594 Free PMC article.
Removing contaminants from databases of draft genomes.
Lu J, Salzberg SL. Lu J, et al. PLoS Comput Biol. 2018 Jun 25;14(6):e1006277. doi: 10.1371/journal.pcbi.1006277. eCollection 2018 Jun. PLoS Comput Biol. 2018. PMID: 29939994 Free PMC article.
MUMmer4: A fast and versatile genome alignment system.
Marçais G, Delcher AL, Phillippy AM, Coston R, Salzberg SL, Zimin A. Marçais G, et al. PLoS Comput Biol. 2018 Jan 26;14(1):e1005944. doi: 10.1371/journal.pcbi.1005944. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29373581 Free PMC article.
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts.
Breitwieser FP, Baker DN, Salzberg SL. Breitwieser FP, et al. Genome Biol. 2018 Nov 16;19(1):198. doi: 10.1186/s13059-018-1568-0. Genome Biol. 2018. PMID: 30445993 Free PMC article.
Use and mis-use of supplementary material in science publications.
Pop M, Salzberg SL. Pop M, et al. BMC Bioinformatics. 2015 Nov 3;16:237. doi: 10.1186/s12859-015-0668-z. BMC Bioinformatics. 2015. PMID: 26525146 Free PMC article.
Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing.
Li Z, Breitwieser FP, Lu J, Jun AS, Asnaghi L, Salzberg SL, Eberhart CG. Li Z, et al. Invest Ophthalmol Vis Sci. 2018 Jan 1;59(1):280-288. doi: 10.1167/iovs.17-21617. Invest Ophthalmol Vis Sci. 2018. PMID: 29340642 Free PMC article.
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.
Pertea M, Shumate A, Pertea G, Varabyou A, Breitwieser FP, Chang YC, Madugundu AK, Pandey A, Salzberg SL. Pertea M, et al. Genome Biol. 2018 Nov 28;19(1):208. doi: 10.1186/s13059-018-1590-2. Genome Biol. 2018. PMID: 30486838 Free PMC article.
What are decision trees?
Kingsford C, Salzberg SL. Kingsford C, et al. Nat Biotechnol. 2008 Sep;26(9):1011-3. doi: 10.1038/nbt0908-1011. Nat Biotechnol. 2008. PMID: 18779814 Free PMC article. Review.
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