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Relating protein adduction to gene expression changes: a systems approach.
Zhang B, Shi Z, Duncan DT, Prodduturi N, Marnett LJ, Liebler DC. Zhang B, et al. Mol Biosyst. 2011 Jul;7(7):2118-27. doi: 10.1039/c1mb05014a. Epub 2011 May 19. Mol Biosyst. 2011. PMID: 21594272 Free PMC article.
A bioinformatics workflow for variant peptide detection in shotgun proteomics.
Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B. Li J, et al. Mol Cell Proteomics. 2011 May;10(5):M110.006536. doi: 10.1074/mcp.M110.006536. Epub 2011 Mar 9. Mol Cell Proteomics. 2011. PMID: 21389108 Free PMC article.
Fast network centrality analysis using GPUs.
Shi Z, Zhang B. Shi Z, et al. BMC Bioinformatics. 2011 May 12;12:149. doi: 10.1186/1471-2105-12-149. BMC Bioinformatics. 2011. PMID: 21569426 Free PMC article.