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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2010 6
2011 20
2012 8
2013 3
2014 3
2015 8
2016 6
2017 4
2018 2
2019 2
2020 2
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58 results
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Page 1
Protein interaction networks revealed by proteome coevolution.
Cong Q, Anishchenko I, Ovchinnikov S, Baker D. Cong Q, et al. Science. 2019 Jul 12;365(6449):185-189. doi: 10.1126/science.aaw6718. Epub 2019 Jul 11. Science. 2019. PMID: 31296772 Free PMC article.
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.
Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL Jr, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ. Alford RF, et al. J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048. doi: 10.1021/acs.jctc.7b00125. Epub 2017 May 12. J Chem Theory Comput. 2017. PMID: 28430426 Free PMC article.
Protein structure prediction using Rosetta in CASP12.
Ovchinnikov S, Park H, Kim DE, DiMaio F, Baker D. Ovchinnikov S, et al. Proteins. 2018 Mar;86 Suppl 1(Suppl 1):113-121. doi: 10.1002/prot.25390. Epub 2017 Oct 8. Proteins. 2018. PMID: 28940798 Free PMC article.
High-resolution comparative modeling with RosettaCM.
Song Y, DiMaio F, Wang RY, Kim D, Miles C, Brunette T, Thompson J, Baker D. Song Y, et al. Structure. 2013 Oct 8;21(10):1735-42. doi: 10.1016/j.str.2013.08.005. Epub 2013 Sep 12. Structure. 2013. PMID: 24035711 Free PMC article.
High-accuracy refinement using Rosetta in CASP13.
Park H, Lee GR, Kim DE, Anishchenko I, Cong Q, Baker D. Park H, et al. Proteins. 2019 Dec;87(12):1276-1282. doi: 10.1002/prot.25784. Epub 2019 Aug 5. Proteins. 2019. PMID: 31325340
Protein homology model refinement by large-scale energy optimization.
Park H, Ovchinnikov S, Kim DE, DiMaio F, Baker D. Park H, et al. Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3054-3059. doi: 10.1073/pnas.1719115115. Epub 2018 Mar 5. Proc Natl Acad Sci U S A. 2018. PMID: 29507254 Free PMC article.
CASP11 refinement experiments with ROSETTA.
Park H, DiMaio F, Baker D. Park H, et al. Proteins. 2016 Sep;84 Suppl 1(Suppl 1):314-22. doi: 10.1002/prot.24862. Epub 2015 Aug 14. Proteins. 2016. PMID: 26205421 Free PMC article.
Improved protein structure prediction using predicted interresidue orientations.
Yang J, Anishchenko I, Park H, Peng Z, Ovchinnikov S, Baker D. Yang J, et al. Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1496-1503. doi: 10.1073/pnas.1914677117. Epub 2020 Jan 2. Proc Natl Acad Sci U S A. 2020. PMID: 31896580 Free PMC article.
Protein structure determination using metagenome sequence data.
Ovchinnikov S, Park H, Varghese N, Huang PS, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D. Ovchinnikov S, et al. Science. 2017 Jan 20;355(6322):294-298. doi: 10.1126/science.aah4043. Science. 2017. PMID: 28104891 Free PMC article.
Structural insights into SAM domain-mediated tankyrase oligomerization.
DaRosa PA, Ovchinnikov S, Xu W, Klevit RE. DaRosa PA, et al. Protein Sci. 2016 Sep;25(9):1744-52. doi: 10.1002/pro.2968. Epub 2016 Jul 4. Protein Sci. 2016. PMID: 27328430 Free PMC article.
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