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2017 1
2018 5
2020 6
2021 0
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Supervised Machine Learning for Population Genetics: A New Paradigm.
Schrider DR, Kern AD. Schrider DR, et al. Trends Genet. 2018 Apr;34(4):301-312. doi: 10.1016/j.tig.2017.12.005. Epub 2018 Jan 10. Trends Genet. 2018. PMID: 29331490 Free PMC article. Review.
Predicting the Landscape of Recombination Using Deep Learning.
Adrion JR, Galloway JG, Kern AD. Adrion JR, et al. Mol Biol Evol. 2020 Jun 1;37(6):1790-1808. doi: 10.1093/molbev/msaa038. Mol Biol Evol. 2020. PMID: 32077950 Free PMC article.
A community-maintained standard library of population genetic models.
Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, McKenzie P, Messer PW, Noskova E, Ortega-Del Vecchyo D, Racimo F, Struck TJ, Gravel S, Gutenkunst RN, Lohmueller KE, Ralph PL, Schrider DR, Siepel A, Kelleher J, Kern AD. Adrion JR, et al. Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967. Elife. 2020. PMID: 32573438 Free PMC article.
Predicting geographic location from genetic variation with deep neural networks.
Battey CJ, Ralph PL, Kern AD. Battey CJ, et al. Elife. 2020 Jun 8;9:e54507. doi: 10.7554/eLife.54507. Elife. 2020. PMID: 32511092 Free PMC article.
The Neutral Theory in Light of Natural Selection.
Kern AD, Hahn MW. Kern AD, et al. Mol Biol Evol. 2018 Jun 1;35(6):1366-1371. doi: 10.1093/molbev/msy092. Mol Biol Evol. 2018. PMID: 29722831 Free PMC article.
diploS/HIC: An Updated Approach to Classifying Selective Sweeps.
Kern AD, Schrider DR. Kern AD, et al. G3 (Bethesda). 2018 May 31;8(6):1959-1970. doi: 10.1534/g3.118.200262. G3 (Bethesda). 2018. PMID: 29626082 Free PMC article.
Discovery of ongoing selective sweeps within Anopheles mosquito populations using deep learning.
Xue AT, Schrider DR, Kern AD; Ag1000G Consortium. Xue AT, et al. Mol Biol Evol. 2020 Oct 6:msaa259. doi: 10.1093/molbev/msaa259. Online ahead of print. Mol Biol Evol. 2020. PMID: 33022051
Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data.
Battey CJ, Ralph PL, Kern AD. Battey CJ, et al. Genetics. 2020 May;215(1):193-214. doi: 10.1534/genetics.120.303143. Epub 2020 Mar 24. Genetics. 2020. PMID: 32209569 Free PMC article.
Genetic diversity of the African malaria vector Anopheles gambiae.
Anopheles gambiae 1000 Genomes Consortium; Data analysis group; Partner working group; Sample collections—Angola:; Burkina Faso:; Cameroon:; Gabon:; Guinea:; Guinea-Bissau:; Kenya:; Uganda:; Crosses:; Sequencing and data production; Web application development; Project coordination. Anopheles gambiae 1000 Genomes Consortium, et al. Nature. 2017 Dec 7;552(7683):96-100. doi: 10.1038/nature24995. Epub 2017 Nov 29. Nature. 2017. PMID: 29186111 Free PMC article.
Genome variation and population structure among 1142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii.
Anopheles gambiae 1000 Genomes Consortium. Anopheles gambiae 1000 Genomes Consortium. Genome Res. 2020 Oct;30(10):1533-1546. doi: 10.1101/gr.262790.120. Epub 2020 Sep 28. Genome Res. 2020. PMID: 32989001 Free PMC article.
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