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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Kumar S, Stecher G, Li M, Knyaz C, Tamura K. Kumar S, et al. Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. doi: 10.1093/molbev/msy096. Mol Biol Evol. 2018. PMID: 29722887 Free PMC article.

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Where Did SARS-CoV-2 Come From?

Leitner T, Kumar S. Leitner T, et al. Mol Biol Evol. 2020 Sep 1;37(9):2463-2464. doi: 10.1093/molbev/msaa162. Mol Biol Evol. 2020. PMID: 32893295 Free PMC article.

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Evolutionary Sparse Learning for Phylogenomics.

Kumar S, Sharma S. Kumar S, et al. Mol Biol Evol. 2021 Oct 27;38(11):4674-4682. doi: 10.1093/molbev/msab227. Mol Biol Evol. 2021. PMID: 34343318 Free PMC article.

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Molecular Memories of a Cambrian Fossil.

Babaian C, Kumar S. Babaian C, et al. Am Biol Teach. 2020 Nov-Dec;82(9):586-595. doi: 10.1525/abt.2020.82.9.586. Am Biol Teach. 2020. PMID: 33967280 Free PMC article.

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MEGA11: Molecular Evolutionary Genetics Analysis Version 11.

Tamura K, Stecher G, Kumar S. Tamura K, et al. Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. doi: 10.1093/molbev/msab120. Mol Biol Evol. 2021. PMID: 33892491 Free PMC article.

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Accurate timetrees require accurate calibrations.

Hedges SB, Tao Q, Walker M, Kumar S. Hedges SB, et al. Proc Natl Acad Sci U S A. 2018 Oct 9;115(41):E9510-E9511. doi: 10.1073/pnas.1812558115. Epub 2018 Sep 28. Proc Natl Acad Sci U S A. 2018. PMID: 30266795 Free PMC article. No abstract available.

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Molecular Evolutionary Genetics Analysis (MEGA) for macOS.

Stecher G, Tamura K, Kumar S. Stecher G, et al. Mol Biol Evol. 2020 Apr 1;37(4):1237-1239. doi: 10.1093/molbev/msz312. Mol Biol Evol. 2020. PMID: 31904846 Free PMC article.

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Molecular and morphological clocks for estimating evolutionary divergence times.

Barba-Montoya J, Tao Q, Kumar S. Barba-Montoya J, et al. BMC Ecol Evol. 2021 May 12;21(1):83. doi: 10.1186/s12862-021-01798-6. BMC Ecol Evol. 2021. PMID: 33980146 Free PMC article.

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An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic.

Kumar S, Tao Q, Weaver S, Sanderford M, Caraballo-Ortiz MA, Sharma S, Pond SLK, Miura S. Kumar S, et al. Mol Biol Evol. 2021 Jul 29;38(8):3046-3059. doi: 10.1093/molbev/msab118. Mol Biol Evol. 2021. PMID: 33942847 Free PMC article.

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Assessing Rapid Relaxed-Clock Methods for Phylogenomic Dating.

Barba-Montoya J, Tao Q, Kumar S. Barba-Montoya J, et al. Genome Biol Evol. 2021 Nov 5;13(11):evab251. doi: 10.1093/gbe/evab251. Genome Biol Evol. 2021. PMID: 34751377 Free PMC article.

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