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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2004 1
2005 1
2006 2
2007 2
2008 1
2010 2
2011 5
2012 1
2013 1
2014 1
2015 1
2016 2
2019 2
2020 0
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18 results
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Page 1
NCBI prokaryotic genome annotation pipeline.
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. Tatusova T, et al. Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24. Nucleic Acids Res. 2016. PMID: 27342282 Free PMC article.
Whole-Genome Annotation with BRAKER.
Hoff KJ, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Methods Mol Biol. 2019;1962:65-95. doi: 10.1007/978-1-4939-9173-0_5. Methods Mol Biol. 2019. PMID: 31020555 Free PMC article.
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.
Hoff KJ, Lange S, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Bioinformatics. 2016 Mar 1;32(5):767-9. doi: 10.1093/bioinformatics/btv661. Epub 2015 Nov 11. Bioinformatics. 2016. PMID: 26559507 Free PMC article.
MakeHub: Fully Automated Generation of UCSC Genome Browser Assembly Hubs.
Hoff KJ. Hoff KJ. Genomics Proteomics Bioinformatics. 2019 Oct;17(5):546-549. doi: 10.1016/j.gpb.2019.05.003. Epub 2020 Jan 28. Genomics Proteomics Bioinformatics. 2019. PMID: 32001327 Free PMC article.
Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ES.
Borodovsky M, Lomsadze A. Borodovsky M, et al. Curr Protoc Bioinformatics. 2011 Sep;Chapter 4:Unit 4.6.1-10. doi: 10.1002/0471250953.bi0406s35. Curr Protoc Bioinformatics. 2011. PMID: 21901742 Free PMC article.
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite.
Borodovsky M, Lomsadze A. Borodovsky M, et al. Curr Protoc Bioinformatics. 2011 Sep;Chapter 4:Unit 4.5.1-17. doi: 10.1002/0471250953.bi0405s35. Curr Protoc Bioinformatics. 2011. PMID: 21901741
MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences.
Tang S, Antonov I, Borodovsky M. Tang S, et al. Bioinformatics. 2013 Jan 1;29(1):114-6. doi: 10.1093/bioinformatics/bts636. Epub 2012 Nov 4. Bioinformatics. 2013. PMID: 23129300 Free PMC article.
The genome of woodland strawberry (Fragaria vesca).
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM. Shulaev V, et al. Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26. Nat Genet. 2011. PMID: 21186353 Free PMC article.
Identification of proteins associated with murine cytomegalovirus virions.
Kattenhorn LM, Mills R, Wagner M, Lomsadze A, Makeev V, Borodovsky M, Ploegh HL, Kessler BM. Kattenhorn LM, et al. J Virol. 2004 Oct;78(20):11187-97. doi: 10.1128/JVI.78.20.11187-11197.2004. J Virol. 2004. PMID: 15452238 Free PMC article.
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D. Wu GA, et al. Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906. Epub 2014 Jun 8. Nat Biotechnol. 2014. PMID: 24908277 Free PMC article.
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