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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2008 1
2010 4
2011 5
2012 3
2021 0
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12 results
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Page 1
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.
Underwood JG, Uzilov AV, Katzman S, Onodera CS, Mainzer JE, Mathews DH, Lowe TM, Salama SR, Haussler D. Underwood JG, et al. Nat Methods. 2010 Dec;7(12):995-1001. doi: 10.1038/nmeth.1529. Epub 2010 Nov 7. Nat Methods. 2010. PMID: 21057495 Free PMC article.
TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.
Seetin MG, Mathews DH. Seetin MG, et al. Bioinformatics. 2012 Mar 15;28(6):792-8. doi: 10.1093/bioinformatics/bts044. Epub 2012 Jan 27. Bioinformatics. 2012. PMID: 22285566 Free PMC article.
Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor.
Vockenhuber MP, Sharma CM, Statt MG, Schmidt D, Xu Z, Dietrich S, Liesegang H, Mathews DH, Suess B. Vockenhuber MP, et al. RNA Biol. 2011 May-Jun;8(3):468-77. doi: 10.4161/rna.8.3.14421. Epub 2011 May 1. RNA Biol. 2011. PMID: 21521948 Free PMC article.
Discovery of a minimal form of RNase P in Pyrobaculum.
Lai LB, Chan PP, Cozen AE, Bernick DL, Brown JW, Gopalan V, Lowe TM. Lai LB, et al. Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22493-8. doi: 10.1073/pnas.1013969107. Epub 2010 Dec 6. Proc Natl Acad Sci U S A. 2010. PMID: 21135215 Free PMC article.
Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints.
Seetin MG, Mathews DH. Seetin MG, et al. J Comput Chem. 2011 Jul 30;32(10):2232-44. doi: 10.1002/jcc.21806. Epub 2011 Apr 21. J Comput Chem. 2011. PMID: 21509787 Free PMC article.
Molecular Mechanics Investigation of an Adenine-Adenine Non-Canonical Pair Conformational Change.
Van Nostrand KP, Kennedy SD, Turner DH, Mathews DH. Van Nostrand KP, et al. J Chem Theory Comput. 2011 Nov 8;7(11):3779-3792. doi: 10.1021/ct200223q. J Chem Theory Comput. 2011. PMID: 22116780 Free PMC article.
The Amber ff99 Force Field Predicts Relative Free Energy Changes for RNA Helix Formation.
Spasic A, Serafini J, Mathews DH. Spasic A, et al. J Chem Theory Comput. 2012 Jul 10;8(7):2497-2505. doi: 10.1021/ct300240k. Epub 2012 Jun 5. J Chem Theory Comput. 2012. PMID: 23112748 Free PMC article.
Biophysical analysis of influenza A virus RNA promoter at physiological temperatures.
Noble E, Mathews DH, Chen JL, Turner DH, Takimoto T, Kim B. Noble E, et al. J Biol Chem. 2011 Jul 1;286(26):22965-70. doi: 10.1074/jbc.M111.239509. Epub 2011 May 9. J Biol Chem. 2011. PMID: 21555520 Free PMC article.
PARTS: probabilistic alignment for RNA joinT secondary structure prediction.
Harmanci AO, Sharma G, Mathews DH. Harmanci AO, et al. Nucleic Acids Res. 2008 Apr;36(7):2406-17. doi: 10.1093/nar/gkn043. Epub 2008 Feb 26. Nucleic Acids Res. 2008. PMID: 18304945 Free PMC article.
Air proteins control differential TRAMP substrate specificity for nuclear RNA surveillance.
Schmidt K, Xu Z, Mathews DH, Butler JS. Schmidt K, et al. RNA. 2012 Oct;18(10):1934-45. doi: 10.1261/rna.033431.112. Epub 2012 Aug 24. RNA. 2012. PMID: 22923767 Free PMC article.
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