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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2011 2
2012 3
2013 4
2014 1
2015 5
2016 3
2018 1
2019 2
2020 1
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22 results
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Page 1
Predicting effects of noncoding variants with deep learning-based sequence model.
Zhou J, Troyanskaya OG. Zhou J, et al. Nat Methods. 2015 Oct;12(10):931-4. doi: 10.1038/nmeth.3547. Epub 2015 Aug 24. Nat Methods. 2015. PMID: 26301843 Free PMC article.
Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk.
Zhou J, Theesfeld CL, Yao K, Chen KM, Wong AK, Troyanskaya OG. Zhou J, et al. Nat Genet. 2018 Aug;50(8):1171-1179. doi: 10.1038/s41588-018-0160-6. Epub 2018 Jul 16. Nat Genet. 2018. PMID: 30013180 Free PMC article.
Selene: a PyTorch-based deep learning library for sequence data.
Chen KM, Cofer EM, Zhou J, Troyanskaya OG. Chen KM, et al. Nat Methods. 2019 Apr;16(4):315-318. doi: 10.1038/s41592-019-0360-8. Epub 2019 Mar 28. Nat Methods. 2019. PMID: 30923381 Free PMC article.
Understanding multicellular function and disease with human tissue-specific networks.
Greene CS, Krishnan A, Wong AK, Ricciotti E, Zelaya RA, Himmelstein DS, Zhang R, Hartmann BM, Zaslavsky E, Sealfon SC, Chasman DI, FitzGerald GA, Dolinski K, Grosser T, Troyanskaya OG. Greene CS, et al. Nat Genet. 2015 Jun;47(6):569-76. doi: 10.1038/ng.3259. Epub 2015 Apr 27. Nat Genet. 2015. PMID: 25915600 Free PMC article.
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder.
Krishnan A, Zhang R, Yao V, Theesfeld CL, Wong AK, Tadych A, Volfovsky N, Packer A, Lash A, Troyanskaya OG. Krishnan A, et al. Nat Neurosci. 2016 Nov;19(11):1454-1462. doi: 10.1038/nn.4353. Epub 2016 Aug 1. Nat Neurosci. 2016. PMID: 27479844 Free PMC article.
Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.
Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG. Zhou J, et al. PLoS Genet. 2019 Sep 25;15(9):e1008382. doi: 10.1371/journal.pgen.1008382. eCollection 2019 Sep. PLoS Genet. 2019. PMID: 31553718 Free PMC article.
Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states.
Zhou J, Troyanskaya OG. Zhou J, et al. Nat Commun. 2016 Feb 4;7:10528. doi: 10.1038/ncomms10528. Nat Commun. 2016. PMID: 26841971 Free PMC article.
Targeted exploration and analysis of large cross-platform human transcriptomic compendia.
Zhu Q, Wong AK, Krishnan A, Aure MR, Tadych A, Zhang R, Corney DC, Greene CS, Bongo LA, Kristensen VN, Charikar M, Li K, Troyanskaya OG. Zhu Q, et al. Nat Methods. 2015 Mar;12(3):211-4, 3 p following 214. doi: 10.1038/nmeth.3249. Epub 2015 Jan 12. Nat Methods. 2015. PMID: 25581801 Free PMC article.
Metabolic network rewiring of propionate flux compensates vitamin B12 deficiency in C. elegans.
Watson E, Olin-Sandoval V, Hoy MJ, Li CH, Louisse T, Yao V, Mori A, Holdorf AD, Troyanskaya OG, Ralser M, Walhout AJ. Watson E, et al. Elife. 2016 Jul 6;5:e17670. doi: 10.7554/eLife.17670. Elife. 2016. PMID: 27383050 Free PMC article.
Accurate quantification of functional analogy among close homologs.
Chikina MD, Troyanskaya OG. Chikina MD, et al. PLoS Comput Biol. 2011 Feb 3;7(2):e1001074. doi: 10.1371/journal.pcbi.1001074. PLoS Comput Biol. 2011. PMID: 21304936 Free PMC article.
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