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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2007 1
2012 4
2013 3
2014 1
2015 1
2016 4
2017 2
2020 0
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14 results
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Page 1
Near-optimal probabilistic RNA-seq quantification.
Bray NL, Pimentel H, Melsted P, Pachter L. Bray NL, et al. Nat Biotechnol. 2016 May;34(5):525-7. doi: 10.1038/nbt.3519. Epub 2016 Apr 4. Nat Biotechnol. 2016. PMID: 27043002
Pseudoalignment for metagenomic read assignment.
Schaeffer L, Pimentel H, Bray N, Melsted P, Pachter L. Schaeffer L, et al. Bioinformatics. 2017 Jul 15;33(14):2082-2088. doi: 10.1093/bioinformatics/btx106. Bioinformatics. 2017. PMID: 28334086 Free PMC article.
Controlling for conservation in genome-wide DNA methylation studies.
Singer M, Pachter L. Singer M, et al. BMC Genomics. 2015 May 30;16(1):420. doi: 10.1186/s12864-015-1604-3. BMC Genomics. 2015. PMID: 26024968 Free PMC article.
The Lair: a resource for exploratory analysis of published RNA-Seq data.
Pimentel H, Sturmfels P, Bray N, Melsted P, Pachter L. Pimentel H, et al. BMC Bioinformatics. 2016 Dec 1;17(1):490. doi: 10.1186/s12859-016-1357-2. BMC Bioinformatics. 2016. PMID: 27905880 Free PMC article.
Quantifying uniformity of mapped reads.
Hower V, Starfield R, Roberts A, Pachter L. Hower V, et al. Bioinformatics. 2012 Oct 15;28(20):2680-2. doi: 10.1093/bioinformatics/bts451. Epub 2012 Jul 18. Bioinformatics. 2012. PMID: 22815359 Free PMC article.
Updating RNA-Seq analyses after re-annotation.
Roberts A, Schaeffer L, Pachter L. Roberts A, et al. Bioinformatics. 2013 Jul 1;29(13):1631-7. doi: 10.1093/bioinformatics/btt197. Epub 2013 May 14. Bioinformatics. 2013. PMID: 23677943 Free PMC article.
PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting Assays.
Li B, Tambe A, Aviran S, Pachter L. Li B, et al. Cell Syst. 2017 May 24;4(5):568-574.e7. doi: 10.1016/j.cels.2017.04.007. Epub 2017 May 10. Cell Syst. 2017. PMID: 28501650 Free PMC article.
Rational experiment design for sequencing-based RNA structure mapping.
Aviran S, Pachter L. Aviran S, et al. RNA. 2014 Dec;20(12):1864-77. doi: 10.1261/rna.043844.113. Epub 2014 Oct 20. RNA. 2014. PMID: 25332375 Free PMC article.
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