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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2009 10
2010 15
2011 5
2020 0
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28 results
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Page 1
TopHat: discovering splice junctions with RNA-Seq.
Trapnell C, Pachter L, Salzberg SL. Trapnell C, et al. Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16. Bioinformatics. 2009. PMID: 19289445 Free PMC article.
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Langmead B, Trapnell C, Pop M, Salzberg SL. Langmead B, et al. Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4. Genome Biol. 2009. PMID: 19261174 Free PMC article.
Between a chicken and a grape: estimating the number of human genes.
Pertea M, Salzberg SL. Pertea M, et al. Genome Biol. 2010;11(5):206. doi: 10.1186/gb-2010-11-5-206. Epub 2010 May 5. Genome Biol. 2010. PMID: 20441615 Free PMC article. Review.
Do-it-yourself genetic testing.
Salzberg SL, Pertea M. Salzberg SL, et al. Genome Biol. 2010;11(10):404. doi: 10.1186/gb-2010-11-10-404. Epub 2010 Oct 7. Genome Biol. 2010. PMID: 20932271 Free PMC article.
Closure of the NCBI SRA and implications for the long-term future of genomics data storage.
Lipman D, Flicek P, Salzberg S, Gerstein M, Knight R. Lipman D, et al. Genome Biol. 2011;12(3):402. doi: 10.1186/gb-2011-12-3-402. Epub 2011 Mar 22. Genome Biol. 2011. PMID: 21418618 Free PMC article. No abstract available.
Sim4cc: a cross-species spliced alignment program.
Zhou L, Pertea M, Delcher AL, Florea L. Zhou L, et al. Nucleic Acids Res. 2009 Jun;37(11):e80. doi: 10.1093/nar/gkp319. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429899 Free PMC article.
The genome of woodland strawberry (Fragaria vesca).
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM. Shulaev V, et al. Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26. Nat Genet. 2011. PMID: 21186353 Free PMC article.
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. Zimin AV, et al. Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24. Genome Biol. 2009. PMID: 19393038 Free PMC article.
Clustering metagenomic sequences with interpolated Markov models.
Kelley DR, Salzberg SL. Kelley DR, et al. BMC Bioinformatics. 2010 Nov 2;11:544. doi: 10.1186/1471-2105-11-544. BMC Bioinformatics. 2010. PMID: 21044341 Free PMC article.
Mugsy: fast multiple alignment of closely related whole genomes.
Angiuoli SV, Salzberg SL. Angiuoli SV, et al. Bioinformatics. 2011 Feb 1;27(3):334-42. doi: 10.1093/bioinformatics/btq665. Epub 2010 Dec 9. Bioinformatics. 2011. PMID: 21148543 Free PMC article.
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