R01-CA-126239/CA/NCI NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2008	2
2010	4
2011	2
2012	3
2013	1
2022	0

1

Combining results of multiple search engines in proteomics.

Shteynberg D, Nesvizhskii AI, Moritz RL, Deutsch EW. Shteynberg D, et al. Mol Cell Proteomics. 2013 Sep;12(9):2383-93. doi: 10.1074/mcp.R113.027797. Epub 2013 May 29. Mol Cell Proteomics. 2013. PMID: 23720762 Free PMC article. Review.

2

Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments.

Nesvizhskii AI. Nesvizhskii AI. Proteomics. 2012 May;12(10):1639-55. doi: 10.1002/pmic.201100537. Proteomics. 2012. PMID: 22611043 Free PMC article. Review.

3

Metabolites of purine nucleoside phosphorylase (NP) in serum have the potential to delineate pancreatic adenocarcinoma.

Vareed SK, Bhat VB, Thompson C, Vasu VT, Fermin D, Choi H, Creighton CJ, Gayatri S, Lan L, Putluri N, Thangjam GS, Kaur P, Shabahang M, Giri JG, Nesvizhskii AI, Asea AA, Cashikar AG, Rao A, McLoughlin J, Sreekumar A. Vareed SK, et al. PLoS One. 2011 Mar 23;6(3):e17177. doi: 10.1371/journal.pone.0017177. PLoS One. 2011. PMID: 21448452 Free PMC article.

4

A statistical model-building perspective to identification of MS/MS spectra with PeptideProphet.

Ma K, Vitek O, Nesvizhskii AI. Ma K, et al. BMC Bioinformatics. 2012;13 Suppl 16(Suppl 16):S1. doi: 10.1186/1471-2105-13-S16-S1. Epub 2012 Nov 5. BMC Bioinformatics. 2012. PMID: 23176103 Free PMC article.

5

Significance analysis of spectral count data in label-free shotgun proteomics.

Choi H, Fermin D, Nesvizhskii AI. Choi H, et al. Mol Cell Proteomics. 2008 Dec;7(12):2373-85. doi: 10.1074/mcp.M800203-MCP200. Epub 2008 Jul 20. Mol Cell Proteomics. 2008. PMID: 18644780 Free PMC article.

6

Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis.

Fermin D, Basrur V, Yocum AK, Nesvizhskii AI. Fermin D, et al. Proteomics. 2011 Apr;11(7):1340-5. doi: 10.1002/pmic.201000650. Epub 2011 Feb 17. Proteomics. 2011. PMID: 21360675 Free PMC article.

7

Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data.

Choi H, Kim S, Gingras AC, Nesvizhskii AI. Choi H, et al. Mol Syst Biol. 2010 Jun 22;6:385. doi: 10.1038/msb.2010.41. Mol Syst Biol. 2010. PMID: 20571534 Free PMC article.

8

Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data.

Ning K, Fermin D, Nesvizhskii AI. Ning K, et al. J Proteome Res. 2012 Apr 6;11(4):2261-71. doi: 10.1021/pr201052x. Epub 2012 Feb 29. J Proteome Res. 2012. PMID: 22329341 Free PMC article.

9

Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics.

Ding Y, Choi H, Nesvizhskii AI. Ding Y, et al. J Proteome Res. 2008 Nov;7(11):4878-89. doi: 10.1021/pr800484x. Epub 2008 Sep 13. J Proteome Res. 2008. PMID: 18788775 Free PMC article.

10

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology.

Ning K, Ng HK, Srihari S, Leong HW, Nesvizhskii AI. Ning K, et al. BMC Bioinformatics. 2010 Oct 12;11:505. doi: 10.1186/1471-2105-11-505. BMC Bioinformatics. 2010. PMID: 20939873 Free PMC article.

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