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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2003 4
2004 4
2005 4
2006 1
2007 6
2008 8
2009 9
2010 2
2011 2
2012 4
2013 3
2014 3
2015 2
2016 1
2017 4
2018 5
2020 0
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58 results
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Page 1
Modeling the Genetic Regulation of Cancer Metabolism: Interplay between Glycolysis and Oxidative Phosphorylation.
Yu L, Lu M, Jia D, Ma J, Ben-Jacob E, Levine H, Kaipparettu BA, Onuchic JN. Yu L, et al. Cancer Res. 2017 Apr 1;77(7):1564-1574. doi: 10.1158/0008-5472.CAN-16-2074. Epub 2017 Feb 15. Cancer Res. 2017. PMID: 28202516 Free PMC article.
Three classes of response elements for human PRC2 and MLL1/2-Trithorax complexes.
Du J, Kirk B, Zeng J, Ma J, Wang Q. Du J, et al. Nucleic Acids Res. 2018 Sep 28;46(17):8848-8864. doi: 10.1093/nar/gky595. Nucleic Acids Res. 2018. PMID: 29992232 Free PMC article.
Improving low-accuracy protein structures using enhanced sampling techniques.
Zang T, Ma T, Wang Q, Ma J. Zang T, et al. J Chem Phys. 2018 Aug 21;149(7):072319. doi: 10.1063/1.5027243. J Chem Phys. 2018. PMID: 30134714 Free PMC article.
Refining protein structures using enhanced sampling techniques with restraints derived from an ensemble-based model.
Ma T, Zang T, Wang Q, Ma J. Ma T, et al. Protein Sci. 2018 Oct;27(10):1842-1849. doi: 10.1002/pro.3486. Epub 2018 Sep 25. Protein Sci. 2018. PMID: 30098055 Free PMC article.
Optimal updating magnitude in adaptive flat-distribution sampling.
Zhang C, Drake JA, Ma J, Pettitt BM. Zhang C, et al. J Chem Phys. 2017 Nov 7;147(17):174105. doi: 10.1063/1.5008618. J Chem Phys. 2017. PMID: 29117700 Free PMC article.
Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill.
Lin X, Noel JK, Wang Q, Ma J, Onuchic JN. Lin X, et al. Proc Natl Acad Sci U S A. 2018 Aug 21;115(34):E7905-E7913. doi: 10.1073/pnas.1805442115. Epub 2018 Jul 16. Proc Natl Acad Sci U S A. 2018. PMID: 30012616 Free PMC article.
OPUS-CSF: A C-atom-based scoring function for ranking protein structural models.
Xu G, Ma T, Zang T, Wang Q, Ma J. Xu G, et al. Protein Sci. 2018 Jan;27(1):286-292. doi: 10.1002/pro.3327. Epub 2017 Nov 6. Protein Sci. 2018. PMID: 29047165 Free PMC article.
Lowered pH Leads to Fusion Peptide Release and a Highly Dynamic Intermediate of Influenza Hemagglutinin.
Lin X, Noel JK, Wang Q, Ma J, Onuchic JN. Lin X, et al. J Phys Chem B. 2016 Sep 15;120(36):9654-60. doi: 10.1021/acs.jpcb.6b06775. Epub 2016 Sep 1. J Phys Chem B. 2016. PMID: 27541202 Free PMC article.
fSUB: normal mode analysis with flexible substructures.
Lu M, Ming D, Ma J. Lu M, et al. J Phys Chem B. 2012 Jul 26;116(29):8636-45. doi: 10.1021/jp300312u. Epub 2012 Apr 5. J Phys Chem B. 2012. PMID: 22448847 Free PMC article.
Order and disorder control the functional rearrangement of influenza hemagglutinin.
Lin X, Eddy NR, Noel JK, Whitford PC, Wang Q, Ma J, Onuchic JN. Lin X, et al. Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12049-54. doi: 10.1073/pnas.1412849111. Epub 2014 Jul 31. Proc Natl Acad Sci U S A. 2014. PMID: 25082896 Free PMC article.
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