R01-GM067801/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2003	4
2004	4
2005	4
2006	1
2007	6
2008	8
2009	9
2010	2
2011	2
2012	4
2013	3
2014	3
2015	2
2016	1
2017	4
2018	5
2022	0

1

Improving low-accuracy protein structures using enhanced sampling techniques.

Zang T, Ma T, Wang Q, Ma J. Zang T, et al. J Chem Phys. 2018 Aug 21;149(7):072319. doi: 10.1063/1.5027243. J Chem Phys. 2018. PMID: 30134714 Free PMC article.

2

OPUS-CSF: A C-atom-based scoring function for ranking protein structural models.

Xu G, Ma T, Zang T, Wang Q, Ma J. Xu G, et al. Protein Sci. 2018 Jan;27(1):286-292. doi: 10.1002/pro.3327. Epub 2017 Nov 6. Protein Sci. 2018. PMID: 29047165 Free PMC article.

3

Optimal updating magnitude in adaptive flat-distribution sampling.

Zhang C, Drake JA, Ma J, Pettitt BM. Zhang C, et al. J Chem Phys. 2017 Nov 7;147(17):174105. doi: 10.1063/1.5008618. J Chem Phys. 2017. PMID: 29117700 Free PMC article.

4

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes.

Ma J. Ma J. Structure. 2005 Mar;13(3):373-80. doi: 10.1016/j.str.2005.02.002. Structure. 2005. PMID: 15766538 Free article. Review.

5

Three classes of response elements for human PRC2 and MLL1/2-Trithorax complexes.

Du J, Kirk B, Zeng J, Ma J, Wang Q. Du J, et al. Nucleic Acids Res. 2018 Sep 28;46(17):8848-8864. doi: 10.1093/nar/gky595. Nucleic Acids Res. 2018. PMID: 29992232 Free PMC article.

6

Deformable complex network for refining low-resolution X-ray structures.

Zhang C, Wang Q, Ma J. Zhang C, et al. Acta Crystallogr D Biol Crystallogr. 2015 Nov;71(Pt 11):2150-7. doi: 10.1107/S139900471501528X. Epub 2015 Oct 27. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 26527134 Free PMC article.

7

fSUB: normal mode analysis with flexible substructures.

Lu M, Ming D, Ma J. Lu M, et al. J Phys Chem B. 2012 Jul 26;116(29):8636-45. doi: 10.1021/jp300312u. Epub 2012 Apr 5. J Phys Chem B. 2012. PMID: 22448847 Free PMC article.

8

Estimating statistical distributions using an integral identity.

Zhang C, Ma J. Zhang C, et al. J Chem Phys. 2012 May 28;136(20):204113. doi: 10.1063/1.4721638. J Chem Phys. 2012. PMID: 22667546 Free PMC article.

9

OPUS-DOSP: A Distance- and Orientation-Dependent All-Atom Potential Derived from Side-Chain Packing.

Xu G, Ma T, Zang T, Sun W, Wang Q, Ma J. Xu G, et al. J Mol Biol. 2017 Oct 13;429(20):3113-3120. doi: 10.1016/j.jmb.2017.08.013. Epub 2017 Aug 31. J Mol Biol. 2017. PMID: 28864201 Free PMC article.

10

Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill.

Lin X, Noel JK, Wang Q, Ma J, Onuchic JN. Lin X, et al. Proc Natl Acad Sci U S A. 2018 Aug 21;115(34):E7905-E7913. doi: 10.1073/pnas.1805442115. Epub 2018 Jul 16. Proc Natl Acad Sci U S A. 2018. PMID: 30012616 Free PMC article.

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