R01-GM081710/GM/NIGMS NIH HHS/United States[Grant Number] - Search Results

Year	Number of Results
2008	4
2009	1
2010	4
2011	2
2012	1
2024	0

1

Kuroda D, Shirai H, Jacobson MP, Nakamura H. Kuroda D, et al. Protein Eng Des Sel. 2012 Oct;25(10):507-21. doi: 10.1093/protein/gzs024. Epub 2012 Jun 2. Protein Eng Des Sel. 2012. PMID: 22661385 Free PMC article. Review.

2

Topology of cyclo-octane energy landscape.

Martin S, Thompson A, Coutsias EA, Watson JP. Martin S, et al. J Chem Phys. 2010 Jun 21;132(23):234115. doi: 10.1063/1.3445267. J Chem Phys. 2010. PMID: 20572697 Free PMC article.

3

Algorithmic dimensionality reduction for molecular structure analysis.

Brown WM, Martin S, Pollock SN, Coutsias EA, Watson JP. Brown WM, et al. J Chem Phys. 2008 Aug 14;129(6):064118. doi: 10.1063/1.2968610. J Chem Phys. 2008. PMID: 18715062 Free PMC article.

4

Antibodies as a model system for comparative model refinement.

Sellers BD, Nilmeier JP, Jacobson MP. Sellers BD, et al. Proteins. 2010 Aug 15;78(11):2490-505. doi: 10.1002/prot.22757. Proteins. 2010. PMID: 20602354 Free PMC article.

5

SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production.

Shimazu T, Hirschey MD, Hua L, Dittenhafer-Reed KE, Schwer B, Lombard DB, Li Y, Bunkenborg J, Alt FW, Denu JM, Jacobson MP, Verdin E. Shimazu T, et al. Cell Metab. 2010 Dec 1;12(6):654-61. doi: 10.1016/j.cmet.2010.11.003. Cell Metab. 2010. PMID: 21109197 Free PMC article.

6

Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling.

Mandell DJ, Coutsias EA, Kortemme T. Mandell DJ, et al. Nat Methods. 2009 Aug;6(8):551-2. doi: 10.1038/nmeth0809-551. Nat Methods. 2009. PMID: 19644455 Free PMC article. No abstract available.

7

Iterative assembly of helical proteins by optimal hydrophobic packing.

Wu GA, Coutsias EA, Dill KA. Wu GA, et al. Structure. 2008 Aug 6;16(8):1257-66. doi: 10.1016/j.str.2008.04.019. Structure. 2008. PMID: 18682227 Free PMC article.

8

Protein loop modeling by using fragment assembly and analytical loop closure.

Lee J, Lee D, Park H, Coutsias EA, Seok C. Lee J, et al. Proteins. 2010 Dec;78(16):3428-36. doi: 10.1002/prot.22849. Epub 2010 Sep 24. Proteins. 2010. PMID: 20872556 Free PMC article.

9

Assessment of protein structure refinement in CASP9.

MacCallum JL, Pérez A, Schnieders MJ, Hua L, Jacobson MP, Dill KA. MacCallum JL, et al. Proteins. 2011;79 Suppl 10(Suppl 10):74-90. doi: 10.1002/prot.23131. Epub 2011 Aug 30. Proteins. 2011. PMID: 22069034 Free PMC article.

10

Multiscale Monte Carlo Sampling of Protein Sidechains: Application to Binding Pocket Flexibility.

Nilmeier J, Jacobson M. Nilmeier J, et al. J Chem Theory Comput. 2008 May;4(5):835-846. doi: 10.1021/ct700334a. J Chem Theory Comput. 2008. PMID: 19119325 Free PMC article.

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