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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2000 2
2001 3
2002 2
2003 3
2004 7
2005 2
2006 5
2007 13
2008 15
2009 16
2010 19
2011 13
2012 1
2013 2
2020 0
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Search Results

97 results
Results by year
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Page 1
TopHat: discovering splice junctions with RNA-Seq.
Trapnell C, Pachter L, Salzberg SL. Trapnell C, et al. Bioinformatics. 2009 May 1;25(9):1105-11. doi: 10.1093/bioinformatics/btp120. Epub 2009 Mar 16. Bioinformatics. 2009. PMID: 19289445 Free PMC article.
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Langmead B, Trapnell C, Pop M, Salzberg SL. Langmead B, et al. Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4. Genome Biol. 2009. PMID: 19261174 Free PMC article.
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Trapnell C, et al. Nat Biotechnol. 2010 May;28(5):511-5. doi: 10.1038/nbt.1621. Epub 2010 May 2. Nat Biotechnol. 2010. PMID: 20436464 Free PMC article.
What are decision trees?
Kingsford C, Salzberg SL. Kingsford C, et al. Nat Biotechnol. 2008 Sep;26(9):1011-3. doi: 10.1038/nbt0908-1011. Nat Biotechnol. 2008. PMID: 18779814 Free PMC article. Review.
Between a chicken and a grape: estimating the number of human genes.
Pertea M, Salzberg SL. Pertea M, et al. Genome Biol. 2010;11(5):206. doi: 10.1186/gb-2010-11-5-206. Epub 2010 May 5. Genome Biol. 2010. PMID: 20441615 Free PMC article. Review.
Do-it-yourself genetic testing.
Salzberg SL, Pertea M. Salzberg SL, et al. Genome Biol. 2010;11(10):404. doi: 10.1186/gb-2010-11-10-404. Epub 2010 Oct 7. Genome Biol. 2010. PMID: 20932271 Free PMC article.
Bioinformatics challenges of new sequencing technology.
Pop M, Salzberg SL. Pop M, et al. Trends Genet. 2008 Mar;24(3):142-9. doi: 10.1016/j.tig.2007.12.006. Epub 2008 Feb 11. Trends Genet. 2008. PMID: 18262676 Free PMC article. Review.
Closure of the NCBI SRA and implications for the long-term future of genomics data storage.
Lipman D, Flicek P, Salzberg S, Gerstein M, Knight R. Lipman D, et al. Genome Biol. 2011;12(3):402. doi: 10.1186/gb-2011-12-3-402. Epub 2011 Mar 22. Genome Biol. 2011. PMID: 21418618 Free PMC article. No abstract available.
The complete genome sequence of Bacillus anthracis Ames "Ancestor".
Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA. Ravel J, et al. J Bacteriol. 2009 Jan;191(1):445-6. doi: 10.1128/JB.01347-08. Epub 2008 Oct 24. J Bacteriol. 2009. PMID: 18952800 Free PMC article.
Genome re-annotation: a wiki solution?
Salzberg SL. Salzberg SL. Genome Biol. 2007;8(1):102. doi: 10.1186/gb-2007-8-1-102. Genome Biol. 2007. PMID: 17274839 Free PMC article.
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