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157 results
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Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium.
González-Pech RA, Ragan MA, Chan CX. González-Pech RA, et al. Among authors: ragan ma. Sci Rep. 2017 Nov 3;7(1):15021. doi: 10.1038/s41598-017-15029-w. Sci Rep. 2017. PMID: 29101370 Free PMC article.
Detection of lateral gene transfer among microbial genomes.
Ragan MA. Ragan MA. Curr Opin Genet Dev. 2001 Dec;11(6):620-6. doi: 10.1016/s0959-437x(00)00244-6. Curr Opin Genet Dev. 2001. PMID: 11682304 Review.
A hybrid clustering approach to recognition of protein families in 114 microbial genomes.
Harlow TJ, Gogarten JP, Ragan MA. Harlow TJ, et al. Among authors: ragan ma. BMC Bioinformatics. 2004 Apr 29;5:45. doi: 10.1186/1471-2105-5-45. BMC Bioinformatics. 2004. PMID: 15115543 Free PMC article.
Thinking laterally about genomes.
Ragan MA. Ragan MA. Genome Inform. 2009 Oct;23(1):221-2. Genome Inform. 2009. PMID: 20180279
Mineralocorticoid receptors: evolutionary and pathophysiological considerations.
Kassahn KS, Ragan MA, Funder JW. Kassahn KS, et al. Among authors: ragan ma. Endocrinology. 2011 May;152(5):1883-90. doi: 10.1210/en.2010-1444. Epub 2011 Feb 22. Endocrinology. 2011. PMID: 21343255
Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomes.
Skippington E, Ragan MA. Skippington E, et al. Among authors: ragan ma. Genome Biol Evol. 2012;4(3):330-45. doi: 10.1093/gbe/evs001. Epub 2012 Jan 4. Genome Biol Evol. 2012. PMID: 22223756 Free PMC article.
Rewiring the dynamic interactome.
Davis MJ, Shin CJ, Jing N, Ragan MA. Davis MJ, et al. Among authors: ragan ma. Mol Biosyst. 2012 Aug;8(8):2054-66, 2013. doi: 10.1039/c2mb25050k. Epub 2012 Jun 22. Mol Biosyst. 2012. PMID: 22729145
The mammalian PYHIN gene family: phylogeny, evolution and expression.
Cridland JA, Curley EZ, Wykes MN, Schroder K, Sweet MJ, Roberts TL, Ragan MA, Kassahn KS, Stacey KJ. Cridland JA, et al. Among authors: ragan ma. BMC Evol Biol. 2012 Aug 7;12:140. doi: 10.1186/1471-2148-12-140. BMC Evol Biol. 2012. PMID: 22871040 Free PMC article.
Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli-Shigella genetic exchange communities.
Skippington E, Ragan MA. Skippington E, et al. Among authors: ragan ma. Open Biol. 2012 Sep;2(9):120112. doi: 10.1098/rsob.120112. Open Biol. 2012. PMID: 23091700 Free PMC article.
Clustering evolving proteins into homologous families.
Chan CX, Mahbob M, Ragan MA. Chan CX, et al. Among authors: ragan ma. BMC Bioinformatics. 2013 Apr 8;14:120. doi: 10.1186/1471-2105-14-120. BMC Bioinformatics. 2013. PMID: 23566217 Free PMC article.
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