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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.
Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N. Friedländer MR, et al. Among authors: rajewsky n. Nucleic Acids Res. 2012 Jan;40(1):37-52. doi: 10.1093/nar/gkr688. Epub 2011 Sep 12. Nucleic Acids Res. 2012. PMID: 21911355 Free PMC article.
Computational identification of microRNA targets.
Rajewsky N, Socci ND. Rajewsky N, et al. Dev Biol. 2004 Mar 15;267(2):529-35. doi: 10.1016/j.ydbio.2003.12.003. Dev Biol. 2004. PMID: 15013811
A pancreatic islet-specific microRNA regulates insulin secretion.
Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M. Poy MN, et al. Among authors: rajewsky n. Nature. 2004 Nov 11;432(7014):226-30. doi: 10.1038/nature03076. Nature. 2004. PMID: 15538371
Combinatorial microRNA target predictions.
Krek A, Grün D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, Rajewsky N. Krek A, et al. Among authors: rajewsky n. Nat Genet. 2005 May;37(5):495-500. doi: 10.1038/ng1536. Epub 2005 Apr 3. Nat Genet. 2005. PMID: 15806104
microRNA target predictions in animals.
Rajewsky N. Rajewsky N. Nat Genet. 2006 Jun;38 Suppl:S8-13. doi: 10.1038/ng1798. Nat Genet. 2006. PMID: 16736023 Review.
Discovering microRNAs from deep sequencing data using miRDeep.
Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N. Friedländer MR, et al. Among authors: rajewsky n. Nat Biotechnol. 2008 Apr;26(4):407-15. doi: 10.1038/nbt1394. Nat Biotechnol. 2008. PMID: 18392026
Widespread changes in protein synthesis induced by microRNAs.
Selbach M, Schwanhäusser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. Selbach M, et al. Among authors: rajewsky n. Nature. 2008 Sep 4;455(7209):58-63. doi: 10.1038/nature07228. Epub 2008 Jul 30. Nature. 2008. PMID: 18668040
A human snoRNA with microRNA-like functions.
Ender C, Krek A, Friedländer MR, Beitzinger M, Weinmann L, Chen W, Pfeffer S, Rajewsky N, Meister G. Ender C, et al. Among authors: rajewsky n. Mol Cell. 2008 Nov 21;32(4):519-28. doi: 10.1016/j.molcel.2008.10.017. Mol Cell. 2008. PMID: 19026782
High-resolution profiling and discovery of planarian small RNAs.
Friedländer MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sánchez Alvarado A, Kim JK, Rajewsky N. Friedländer MR, et al. Among authors: rajewsky n. Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11546-51. doi: 10.1073/pnas.0905222106. Epub 2009 Jun 29. Proc Natl Acad Sci U S A. 2009. PMID: 19564616 Free PMC article.
Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression.
Stoeckius M, Maaskola J, Colombo T, Rahn HP, Friedländer MR, Li N, Chen W, Piano F, Rajewsky N. Stoeckius M, et al. Among authors: rajewsky n. Nat Methods. 2009 Oct;6(10):745-51. doi: 10.1038/nmeth.1370. Epub 2009 Sep 6. Nat Methods. 2009. PMID: 19734907 Free PMC article.
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