Raman AT - Search Results

1

Detecting hidden batch factors through data-adaptive adjustment for biological effects.

Yi H, Raman AT, Zhang H, Allen GI, Liu Z. Yi H, et al. Among authors: raman at. Bioinformatics. 2018 Apr 1;34(7):1141-1147. doi: 10.1093/bioinformatics/btx635. Bioinformatics. 2018. PMID: 29617963 Free PMC article.

2

Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations.

Raman AT, Pohodich AE, Wan YW, Yalamanchili HK, Lowry WE, Zoghbi HY, Liu Z. Raman AT, et al. Nat Commun. 2018 Aug 13;9(1):3225. doi: 10.1038/s41467-018-05627-1. Nat Commun. 2018. PMID: 30104565 Free PMC article.

3

Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity.

Pohodich AE, Yalamanchili H, Raman AT, Wan YW, Gundry M, Hao S, Jin H, Tang J, Liu Z, Zoghbi HY. Pohodich AE, et al. Among authors: raman at. Elife. 2018 Mar 23;7:e34031. doi: 10.7554/eLife.34031. Elife. 2018. PMID: 29570050 Free PMC article.

4

Nr2f1 heterozygous knockout mice recapitulate neurological phenotypes of Bosch-Boonstra-Schaaf optic atrophy syndrome and show impaired hippocampal synaptic plasticity.

Chen CA, Wang W, Pedersen SE, Raman A, Seymour ML, Ruiz FR, Xia A, van der Heijden ME, Wang L, Yin J, Lopez J, Rech ME, Lewis RA, Wu SM, Liu Z, Pereira FA, Pautler RG, Zoghbi HY, Schaaf CP. Chen CA, et al. Hum Mol Genet. 2020 Mar 27;29(5):705-715. doi: 10.1093/hmg/ddz233. Hum Mol Genet. 2020. PMID: 31600777 Free PMC article.

5

Loss of histone acetylation and H3K4 methylation promotes melanocytic malignant transformation.

Raman AT, Rai K. Raman AT, et al. Mol Cell Oncol. 2018 Feb 26;5(3):e1359229. doi: 10.1080/23723556.2017.1359229. eCollection 2018. Mol Cell Oncol. 2018. PMID: 30250885 Free PMC article.

6

Atypical plant homeodomain of UBR7 functions as an H2BK120Ub ligase and breast tumor suppressor.

Adhikary S, Chakravarti D, Terranova C, Sengupta I, Maitituoheti M, Dasgupta A, Srivastava DK, Ma J, Raman AT, Tarco E, Sahin AA, Bassett R, Yang F, Tapia C, Roy S, Rai K, Das C. Adhikary S, et al. Among authors: raman at. Nat Commun. 2019 Mar 28;10(1):1398. doi: 10.1038/s41467-019-08986-5. Nat Commun. 2019. PMID: 30923315 Free PMC article.

7

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues.

Terranova C, Tang M, Orouji E, Maitituoheti M, Raman A, Amin S, Liu Z, Rai K. Terranova C, et al. J Vis Exp. 2018 Apr 5;(134):56972. doi: 10.3791/56972. J Vis Exp. 2018. PMID: 29683440 Free PMC article.

8

Reprogramming of H3K9bhb at regulatory elements is a key feature of fasting in the small intestine.

Terranova CJ, Stemler KM, Barrodia P, Jeter-Jones SL, Ge Z, de la Cruz Bonilla M, Raman A, Cheng CW, Allton KL, Arslan E, Yilmaz ÖH, Barton MC, Rai K, Piwnica-Worms H. Terranova CJ, et al. Cell Rep. 2021 Nov 23;37(8):110044. doi: 10.1016/j.celrep.2021.110044. Cell Rep. 2021. PMID: 34818540 Free PMC article.

9

Enhancer Reprogramming Confers Dependence on Glycolysis and IGF Signaling in KMT2D Mutant Melanoma.

Maitituoheti M, Keung EZ, Tang M, Yan L, Alam H, Han G, Singh AK, Raman AT, Terranova C, Sarkar S, Orouji E, Amin SB, Sharma S, Williams M, Samant NS, Dhamdhere M, Zheng N, Shah T, Shah A, Axelrad JB, Anvar NE, Lin YH, Jiang S, Chang EQ, Ingram DR, Wang WL, Lazar A, Lee MG, Muller F, Wang L, Ying H, Rai K. Maitituoheti M, et al. Among authors: raman at. Cell Rep. 2020 Oct 20;33(3):108293. doi: 10.1016/j.celrep.2020.108293. Cell Rep. 2020. PMID: 33086062 Free PMC article.

10

Chromatin state dynamics confers specific therapeutic strategies in enhancer subtypes of colorectal cancer.

Orouji E, Raman AT, Singh AK, Sorokin A, Arslan E, Ghosh AK, Schulz J, Terranova C, Jiang S, Tang M, Maitituoheti M, Callahan SC, Barrodia P, Tomczak K, Jiang Y, Jiang Z, Davis JS, Ghosh S, Lee HM, Reyes-Uribe L, Chang K, Liu Y, Chen H, Azhdarinia A, Morris J, Vilar E, Carmon KS, Kopetz SE, Rai K. Orouji E, et al. Among authors: raman at. Gut. 2022 May;71(5):938-949. doi: 10.1136/gutjnl-2020-322835. Epub 2021 May 31. Gut. 2022. PMID: 34059508 Free PMC article.

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