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Massively multiplex single-cell Hi-C.
Ramani V, Deng X, Qiu R, Gunderson KL, Steemers FJ, Disteche CM, Noble WS, Duan Z, Shendure J. Ramani V, et al. Nat Methods. 2017 Mar;14(3):263-266. doi: 10.1038/nmeth.4155. Epub 2017 Jan 30. Nat Methods. 2017. PMID: 28135255 Free PMC article.
Bipartite structure of the inactive mouse X chromosome.
Deng X, Ma W, Ramani V, Hill A, Yang F, Ay F, Berletch JB, Blau CA, Shendure J, Duan Z, Noble WS, Disteche CM. Deng X, et al. Among authors: ramani v. Genome Biol. 2015 Aug 7;16(1):152. doi: 10.1186/s13059-015-0728-8. Genome Biol. 2015. PMID: 26248554 Free PMC article.
Understanding Spatial Genome Organization: Methods and Insights.
Ramani V, Shendure J, Duan Z. Ramani V, et al. Genomics Proteomics Bioinformatics. 2016 Feb;14(1):7-20. doi: 10.1016/j.gpb.2016.01.002. Epub 2016 Feb 11. Genomics Proteomics Bioinformatics. 2016. PMID: 26876719 Free PMC article. Review.
Smash and DASH with Cas9.
Ramani V, Shendure J. Ramani V, et al. Genome Biol. 2016 Mar 5;17:42. doi: 10.1186/s13059-016-0905-4. Genome Biol. 2016. PMID: 26944856 Free PMC article.
Mapping 3D genome architecture through in situ DNase Hi-C.
Ramani V, Cusanovich DA, Hause RJ, Ma W, Qiu R, Deng X, Blau CA, Disteche CM, Noble WS, Shendure J, Duan Z. Ramani V, et al. Nat Protoc. 2016 Nov;11(11):2104-21. doi: 10.1038/nprot.2016.126. Epub 2016 Sep 29. Nat Protoc. 2016. PMID: 27685100 Free PMC article.
Comprehensive single-cell transcriptional profiling of a multicellular organism.
Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J. Cao J, et al. Among authors: ramani v. Science. 2017 Aug 18;357(6352):661-667. doi: 10.1126/science.aam8940. Science. 2017. PMID: 28818938 Free PMC article.
Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
Cao J, Cusanovich DA, Ramani V, Aghamirzaie D, Pliner HA, Hill AJ, Daza RM, McFaline-Figueroa JL, Packer JS, Christiansen L, Steemers FJ, Adey AC, Trapnell C, Shendure J. Cao J, et al. Among authors: ramani v. Science. 2018 Sep 28;361(6409):1380-1385. doi: 10.1126/science.aau0730. Epub 2018 Aug 30. Science. 2018. PMID: 30166440 Free PMC article.
170 results