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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak.
Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, Malboeuf CM, Qu J, Gladden AD, Schaffner SF, Yang X, Jiang PP, Nekoui M, Colubri A, Coomber MR, Fonnie M, Moigboi A, Gbakie M, Kamara FK, Tucker V, Konuwa E, Saffa S, Sellu J, Jalloh AA, Kovoma A, Koninga J, Mustapha I, Kargbo K, Foday M, Yillah M, Kanneh F, Robert W, Massally JL, Chapman SB, Bochicchio J, Murphy C, Nusbaum C, Young S, Birren BW, Grant DS, Scheiffelin JS, Lander ES, Happi C, Gevao SM, Gnirke A, Rambaut A, Garry RF, Khan SH, Sabeti PC. Gire SK, et al. Science. 2014 Sep 12;345(6202):1369-72. doi: 10.1126/science.1259657. Epub 2014 Aug 28. Science. 2014. PMID: 25214632 Free PMC article.
The epidemic behavior of the hepatitis C virus.
Pybus OG, Charleston MA, Gupta S, Rambaut A, Holmes EC, Harvey PH. Pybus OG, et al. Science. 2001 Jun 22;292(5525):2323-5. doi: 10.1126/science.1058321. Science. 2001. PMID: 11423661
Flight of the dodo.
Shapiro B, Sibthorpe D, Rambaut A, Austin J, Wragg GM, Bininda-Emonds OR, Lee PL, Cooper A. Shapiro B, et al. Science. 2002 Mar 1;295(5560):1683. doi: 10.1126/science.295.5560.1683. Science. 2002. PMID: 11872833 No abstract available.
Rise and fall of the Beringian steppe bison.
Shapiro B, Drummond AJ, Rambaut A, Wilson MC, Matheus PE, Sher AV, Pybus OG, Gilbert MT, Barnes I, Binladen J, Willerslev E, Hansen AJ, Baryshnikov GF, Burns JA, Davydov S, Driver JC, Froese DG, Harington CR, Keddie G, Kosintsev P, Kunz ML, Martin LD, Stephenson RO, Storer J, Tedford R, Zimov S, Cooper A. Shapiro B, et al. Science. 2004 Nov 26;306(5701):1561-5. doi: 10.1126/science.1101074. Science. 2004. PMID: 15567864
Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1.
Gifford RJ, de Oliveira T, Rambaut A, Pybus OG, Dunn D, Vandamme AM, Kellam P, Pillay D; UK Collaborative Group on HIV Drug Resistance. Gifford RJ, et al. J Virol. 2007 Dec;81(23):13050-6. doi: 10.1128/JVI.00889-07. Epub 2007 Sep 26. J Virol. 2007. PMID: 17898057 Free PMC article.
The genomic and epidemiological dynamics of human influenza A virus.
Rambaut A, Pybus OG, Nelson MI, Viboud C, Taubenberger JK, Holmes EC. Rambaut A, et al. Nature. 2008 May 29;453(7195):615-9. doi: 10.1038/nature06945. Epub 2008 Apr 16. Nature. 2008. PMID: 18418375 Free PMC article.
Pandemic potential of a strain of influenza A (H1N1): early findings.
Fraser C, Donnelly CA, Cauchemez S, Hanage WP, Van Kerkhove MD, Hollingsworth TD, Griffin J, Baggaley RF, Jenkins HE, Lyons EJ, Jombart T, Hinsley WR, Grassly NC, Balloux F, Ghani AC, Ferguson NM, Rambaut A, Pybus OG, Lopez-Gatell H, Alpuche-Aranda CM, Chapela IB, Zavala EP, Guevara DM, Checchi F, Garcia E, Hugonnet S, Roth C; WHO Rapid Pandemic Assessment Collaboration. Fraser C, et al. Science. 2009 Jun 19;324(5934):1557-61. doi: 10.1126/science.1176062. Epub 2009 May 11. Science. 2009. PMID: 19433588 Free PMC article.
Origin and fate of A/H1N1 influenza in Scotland during 2009.
Lycett S, McLeish NJ, Robertson C, Carman W, Baillie G, McMenamin J, Rambaut A, Simmonds P, Woolhouse M, Leigh Brown AJ. Lycett S, et al. J Gen Virol. 2012 Jun;93(Pt 6):1253-1260. doi: 10.1099/vir.0.039370-0. Epub 2012 Feb 15. J Gen Virol. 2012. PMID: 22337637 Free PMC article.
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