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Heterogeneity of pneumococcal phase variants in invasive human infections.
Serrano I, Melo-Cristino J, Ramirez M. Serrano I, et al. BMC Microbiol. 2006 Jul 26;6:67. doi: 10.1186/1471-2180-6-67. BMC Microbiol. 2006. PMID: 16872486 Free PMC article.
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.
Francisco AP, Bugalho M, Ramirez M, Carriço JA. Francisco AP, et al. BMC Bioinformatics. 2009 May 18;10:152. doi: 10.1186/1471-2105-10-152. BMC Bioinformatics. 2009. PMID: 19450271 Free PMC article.
Pherotypes are driving genetic differentiation within Streptococcus pneumoniae.
Carrolo M, Pinto FR, Melo-Cristino J, Ramirez M. Carrolo M, et al. BMC Microbiol. 2009 Sep 7;9:191. doi: 10.1186/1471-2180-9-191. BMC Microbiol. 2009. PMID: 19735561 Free PMC article.
Adjusted Wallace coefficient as a measure of congruence between typing methods.
Severiano A, Pinto FR, Ramirez M, Carriço JA. Severiano A, et al. J Clin Microbiol. 2011 Nov;49(11):3997-4000. doi: 10.1128/JCM.00624-11. Epub 2011 Sep 14. J Clin Microbiol. 2011. PMID: 21918028 Free PMC article.
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.
Francisco AP, Vaz C, Monteiro PT, Melo-Cristino J, Ramirez M, Carriço JA. Francisco AP, et al. BMC Bioinformatics. 2012 May 8;13:87. doi: 10.1186/1471-2105-13-87. BMC Bioinformatics. 2012. PMID: 22568821 Free PMC article.
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