Ramirez M - Search Results

1

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data.

Jesus TF, Ribeiro-Gonçalves B, Silva DN, Bortolaia V, Ramirez M, Carriço JA. Jesus TF, et al. Among authors: ramirez m. Nucleic Acids Res. 2019 Jan 8;47(D1):D188-D194. doi: 10.1093/nar/gky1073. Nucleic Acids Res. 2019. PMID: 30395323 Free PMC article.

2

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.

Ribeiro-Gonçalves B, Francisco AP, Vaz C, Ramirez M, Carriço JA. Ribeiro-Gonçalves B, et al. Among authors: ramirez m. Nucleic Acids Res. 2016 Jul 8;44(W1):W246-51. doi: 10.1093/nar/gkw359. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131357 Free PMC article.

3

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.

Nascimento M, Sousa A, Ramirez M, Francisco AP, Carriço JA, Vaz C. Nascimento M, et al. Among authors: ramirez m. Bioinformatics. 2017 Jan 1;33(1):128-129. doi: 10.1093/bioinformatics/btw582. Epub 2016 Sep 6. Bioinformatics. 2017. PMID: 27605102

4

Epidemiological Surveillance and Typing Methods to Track Antibiotic Resistant Strains Using High Throughput Sequencing.

Machado MP, Ribeiro-Gonçalves B, Silva M, Ramirez M, Carriço JA. Machado MP, et al. Among authors: ramirez m. Methods Mol Biol. 2017;1520:331-356. doi: 10.1007/978-1-4939-6634-9_20. Methods Mol Biol. 2017. PMID: 27873262

5

Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution.

Carriço JA, Sabat AJ, Friedrich AW, Ramirez M; ESCMID Study Group for Epidemiological Markers (ESGEM). Carriço JA, et al. Among authors: ramirez m. Euro Surveill. 2013 Jan 24;18(4):20382. doi: 10.2807/ese.18.04.20382-en. Euro Surveill. 2013. PMID: 23369390 Review.

6

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW. Couto N, et al. Among authors: ramirez m. Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w. Sci Rep. 2018. PMID: 30213965 Free PMC article.

7

Streptococcus canis Are a Single Population Infecting Multiple Animal Hosts Despite the Diversity of the Universally Present M-Like Protein SCM.

Pinho MD, Foster G, Pomba C, Machado MP, Baily JL, Kuiken T, Melo-Cristino J, Ramirez M; Portuguese Group for the Study of Streptococcal Infections. Pinho MD, et al. Among authors: ramirez m. Front Microbiol. 2019 Mar 29;10:631. doi: 10.3389/fmicb.2019.00631. eCollection 2019. Front Microbiol. 2019. PMID: 30984150 Free PMC article.

8

Conjugate vaccine serotypes persist as major causes of non-invasive pneumococcal pneumonia in Portugal despite declines in serotypes 3 and 19A (2012-2015).

Horácio AN, Silva-Costa C, Lopes E, Ramirez M, Melo-Cristino J; Portuguese Group for the Study of Streptococcal Infections. Horácio AN, et al. Among authors: ramirez m. PLoS One. 2018 Nov 2;13(11):e0206912. doi: 10.1371/journal.pone.0206912. eCollection 2018. PLoS One. 2018. PMID: 30388168 Free PMC article.

9

Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany.

van der Linden M, Mamede R, Levina N, Helwig P, Vila-Cerqueira P, Carriço JA, Melo-Cristino J, Ramirez M, Martins ER. van der Linden M, et al. Among authors: ramirez m. J Antimicrob Chemother. 2020 Feb 1;75(2):296-299. doi: 10.1093/jac/dkz465. J Antimicrob Chemother. 2020. PMID: 31740946 Free PMC article.

10

Population Structure of Streptococcus pneumoniae Causing Invasive Disease in Adults in Portugal before PCV13 Availability for Adults: 2008-2011.

Horácio AN, Silva-Costa C, Diamantino-Miranda J, Lopes JP, Ramirez M, Melo-Cristino J; Portuguese Group for the Study of Streptococcal Infections. Horácio AN, et al. Among authors: ramirez m. PLoS One. 2016 May 11;11(5):e0153602. doi: 10.1371/journal.pone.0153602. eCollection 2016. PLoS One. 2016. PMID: 27168156 Free PMC article.

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