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Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus.
Carbone I, Jakobek JL, Ramirez-Prado JH, Horn BW. Carbone I, et al. Mol Ecol. 2007 Oct;16(20):4401-17. doi: 10.1111/j.1365-294X.2007.03464.x. Mol Ecol. 2007. PMID: 17725568
Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus.
Horn BW, Ramirez-Prado JH, Carbone I. Horn BW, et al. Fungal Genet Biol. 2009 Feb;46(2):169-75. doi: 10.1016/j.fgb.2008.11.004. Epub 2008 Nov 17. Fungal Genet Biol. 2009. PMID: 19038353
Characterization and population analysis of the mating-type genes in Aspergillus flavus and Aspergillus parasiticus.
Ramirez-Prado JH, Moore GG, Horn BW, Carbone I. Ramirez-Prado JH, et al. Fungal Genet Biol. 2008 Sep;45(9):1292-9. doi: 10.1016/j.fgb.2008.06.007. Epub 2008 Jul 3. Fungal Genet Biol. 2008. PMID: 18652906
Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster.
Carbone I, Ramirez-Prado JH, Jakobek JL, Horn BW. Carbone I, et al. BMC Evol Biol. 2007 Jul 9;7:111. doi: 10.1186/1471-2148-7-111. BMC Evol Biol. 2007. PMID: 17620135 Free PMC article.
Isolation of Peptide aptamers to target protein function.
Lopez-Ochoa L, Nash TE, Ramirez-Prado J, Hanley-Bowdoin L. Lopez-Ochoa L, et al. Methods Mol Biol. 2009;535:333-60. doi: 10.1007/978-1-59745-557-2_19. Methods Mol Biol. 2009. PMID: 19377987
Large-scale phylogenetic classification of fungal chitin synthases and identification of a putative cell-wall metabolism gene cluster in Aspergillus genomes.
Pacheco-Arjona JR, Ramirez-Prado JH. Pacheco-Arjona JR, et al. PLoS One. 2014 Aug 22;9(8):e104920. doi: 10.1371/journal.pone.0104920. eCollection 2014. PLoS One. 2014. PMID: 25148134 Free PMC article.
Peptide aptamers that bind to a geminivirus replication protein interfere with viral replication in plant cells.
Lopez-Ochoa L, Ramirez-Prado J, Hanley-Bowdoin L. Lopez-Ochoa L, et al. J Virol. 2006 Jun;80(12):5841-53. doi: 10.1128/JVI.02698-05. J Virol. 2006. PMID: 16731923 Free PMC article.
The sexual state of Aspergillus parasiticus.
Horn BW, Ramirez-Prado JH, Carbone I. Horn BW, et al. Mycologia. 2009 Mar-Apr;101(2):275-80. doi: 10.3852/08-205. Mycologia. 2009. PMID: 19397202
Characterization of N-Acetylglucosamine Biosynthesis in Pneumocystis species. A New Potential Target for Therapy.
Kottom TJ, Hebrink DM, Jenson PE, Ramirez-Prado JH, Limper AH. Kottom TJ, et al. Am J Respir Cell Mol Biol. 2017 Feb;56(2):213-222. doi: 10.1165/rcmb.2016-0155OC. Am J Respir Cell Mol Biol. 2017. PMID: 27632412 Free PMC article.
Genome-wide in silico identification of GPI proteins in Mycosphaerella fijiensis and transcriptional analysis of two GPI-anchored β-1,3-glucanosyltransferases.
Kantún-Moreno N, Vázquez-Euán R, Tzec-Simá M, Peraza-Echeverría L, Grijalva-Arango R, Rodríguez-García C, James AC, Ramírez-Prado J, Islas-Flores I, Canto-Canché B. Kantún-Moreno N, et al. Mycologia. 2013 Mar-Apr;105(2):285-96. doi: 10.3852/12-103. Epub 2012 Sep 6. Mycologia. 2013. PMID: 22962348
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