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Optimizing PCR assays for DNA-based cancer diagnostics.
Bashir A, Lu Q, Carson D, Raphael BJ, Liu YT, Bafna V. Bashir A, et al. Among authors: raphael bj. J Comput Biol. 2010 Mar;17(3):369-81. doi: 10.1089/cmb.2009.0203. J Comput Biol. 2010. PMID: 20377451 Free PMC article.
De novo discovery of mutated driver pathways in cancer.
Vandin F, Upfal E, Raphael BJ. Vandin F, et al. Among authors: raphael bj. Genome Res. 2012 Feb;22(2):375-85. doi: 10.1101/gr.120477.111. Epub 2011 Jun 7. Genome Res. 2012. PMID: 21653252 Free PMC article.
Reconstructing cancer genomes from paired-end sequencing data.
Oesper L, Ritz A, Aerni SJ, Drebin R, Raphael BJ. Oesper L, et al. Among authors: raphael bj. BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S10. doi: 10.1186/1471-2105-13-S6-S10. BMC Bioinformatics. 2012. PMID: 22537039 Free PMC article.
The mutational landscape of lethal castration-resistant prostate cancer.
Grasso CS, Wu YM, Robinson DR, Cao X, Dhanasekaran SM, Khan AP, Quist MJ, Jing X, Lonigro RJ, Brenner JC, Asangani IA, Ateeq B, Chun SY, Siddiqui J, Sam L, Anstett M, Mehra R, Prensner JR, Palanisamy N, Ryslik GA, Vandin F, Raphael BJ, Kunju LP, Rhodes DR, Pienta KJ, Chinnaiyan AM, Tomlins SA. Grasso CS, et al. Among authors: raphael bj. Nature. 2012 Jul 12;487(7406):239-43. doi: 10.1038/nature11125. Nature. 2012. PMID: 22722839 Free PMC article.
Finding driver pathways in cancer: models and algorithms.
Vandin F, Upfal E, Raphael BJ. Vandin F, et al. Among authors: raphael bj. Algorithms Mol Biol. 2012 Sep 6;7(1):23. doi: 10.1186/1748-7188-7-23. Algorithms Mol Biol. 2012. PMID: 22954134 Free PMC article.
Reconstructing genome mixtures from partial adjacencies.
Mahmoody A, Kahn CL, Raphael BJ. Mahmoody A, et al. Among authors: raphael bj. BMC Bioinformatics. 2012;13 Suppl 19(Suppl 19):S9. doi: 10.1186/1471-2105-13-S19-S9. Epub 2012 Dec 19. BMC Bioinformatics. 2012. PMID: 23282028 Free PMC article.
192 results