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A sequence-based survey of the complex structural organization of tumor genomes.
Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC. Raphael BJ, et al. Genome Biol. 2008;9(3):R59. doi: 10.1186/gb-2008-9-3-r59. Epub 2008 Mar 25. Genome Biol. 2008. PMID: 18364049 Free PMC article.
Structural variation analysis with strobe reads.
Ritz A, Bashir A, Raphael BJ. Ritz A, et al. Among authors: raphael bj. Bioinformatics. 2010 May 15;26(10):1291-8. doi: 10.1093/bioinformatics/btq153. Epub 2010 Apr 8. Bioinformatics. 2010. PMID: 20378554
De novo discovery of mutated driver pathways in cancer.
Vandin F, Upfal E, Raphael BJ. Vandin F, et al. Among authors: raphael bj. Genome Res. 2012 Feb;22(2):375-85. doi: 10.1101/gr.120477.111. Epub 2011 Jun 7. Genome Res. 2012. PMID: 21653252 Free PMC article.
Identification of polymorphic inversions from genotypes.
Cáceres A, Sindi SS, Raphael BJ, Cáceres M, González JR. Cáceres A, et al. Among authors: raphael bj. BMC Bioinformatics. 2012 Feb 9;13:28. doi: 10.1186/1471-2105-13-28. BMC Bioinformatics. 2012. PMID: 22321652 Free PMC article.
Reconstructing cancer genomes from paired-end sequencing data.
Oesper L, Ritz A, Aerni SJ, Drebin R, Raphael BJ. Oesper L, et al. Among authors: raphael bj. BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S10. doi: 10.1186/1471-2105-13-S6-S10. BMC Bioinformatics. 2012. PMID: 22537039 Free PMC article.
192 results