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21 results
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Sub-angstrom modeling of complexes between flexible peptides and globular proteins.
Raveh B, London N, Schueler-Furman O. Raveh B, et al. Proteins. 2010 Jul;78(9):2029-40. doi: 10.1002/prot.22716. Proteins. 2010. PMID: 20455260
Prediction of transition metal-binding sites from apo protein structures.
Babor M, Gerzon S, Raveh B, Sobolev V, Edelman M. Babor M, et al. Among authors: raveh b. Proteins. 2008 Jan 1;70(1):208-17. doi: 10.1002/prot.21587. Proteins. 2008. PMID: 17657805
Rapid sampling of molecular motions with prior information constraints.
Raveh B, Enosh A, Schueler-Furman O, Halperin D. Raveh B, et al. PLoS Comput Biol. 2009 Feb;5(2):e1000295. doi: 10.1371/journal.pcbi.1000295. Epub 2009 Feb 27. PLoS Comput Biol. 2009. PMID: 19247429 Free PMC article.
Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?
London N, Raveh B, Movshovitz-Attias D, Schueler-Furman O. London N, et al. Among authors: raveh b. Proteins. 2010 Nov 15;78(15):3140-9. doi: 10.1002/prot.22785. Proteins. 2010. PMID: 20607702 Free PMC article.
Allosteric regulation of glycogen synthase kinase 3β: a theoretical study.
Buch I, Fishelovitch D, London N, Raveh B, Wolfson HJ, Nussinov R. Buch I, et al. Among authors: raveh b. Biochemistry. 2010 Dec 28;49(51):10890-901. doi: 10.1021/bi100822q. Epub 2010 Dec 3. Biochemistry. 2010. PMID: 21105670 Free PMC article.
Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors.
Raveh B, London N, Zimmerman L, Schueler-Furman O. Raveh B, et al. PLoS One. 2011 Apr 29;6(4):e18934. doi: 10.1371/journal.pone.0018934. PLoS One. 2011. PMID: 21572516 Free PMC article.
Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions.
London N, Raveh B, Cohen E, Fathi G, Schueler-Furman O. London N, et al. Among authors: raveh b. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W249-53. doi: 10.1093/nar/gkr431. Epub 2011 May 27. Nucleic Acids Res. 2011. PMID: 21622962 Free PMC article.
Modeling peptide-protein interactions.
London N, Raveh B, Schueler-Furman O. London N, et al. Among authors: raveh b. Methods Mol Biol. 2012;857:375-98. doi: 10.1007/978-1-61779-588-6_17. Methods Mol Biol. 2012. PMID: 22323231
Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, Bradley P, Bystroff C, Conway P, Cooper S, Correia BE, Coventry B, Das R, De Jong RM, DiMaio F, Dsilva L, Dunbrack R, Ford AS, Frenz B, Fu DY, Geniesse C, Goldschmidt L, Gowthaman R, Gray JJ, Gront D, Guffy S, Horowitz S, Huang PS, Huber T, Jacobs TM, Jeliazkov JR, Johnson DK, Kappel K, Karanicolas J, Khakzad H, Khar KR, Khare SD, Khatib F, Khramushin A, King IC, Kleffner R, Koepnick B, Kortemme T, Kuenze G, Kuhlman B, Kuroda D, Labonte JW, Lai JK, Lapidoth G, Leaver-Fay A, Lindert S, Linsky T, London N, Lubin JH, Lyskov S, Maguire J, Malmström L, Marcos E, Marcu O, Marze NA, Meiler J, Moretti R, Mulligan VK, Nerli S, Norn C, Ó'Conchúir S, Ollikainen N, Ovchinnikov S, Pacella MS, Pan X, Park H, Pavlovicz RE, Pethe M, Pierce BG, Pilla KB, Raveh B, Renfrew PD, Burman SSR, Rubenstein A, Sauer MF, Scheck A, Schief W, Schueler-Furman O, Sedan Y, Sevy AM, Sgourakis NG, Shi L, Siegel JB, Silva DA, Smith S, Song Y, Stein A, Szegedy M, Teets FD, Thyme SB, Wang RY, Watkins A, Zimmerman L, Bonneau R. Leman JK, et al. Among authors: raveh b. Nat Methods. 2020 Jul;17(7):665-680. doi: 10.1038/s41592-020-0848-2. Epub 2020 Jun 1. Nat Methods. 2020. PMID: 32483333 Review.
Autophosphorylation activates Dictyostelium myosin II heavy chain kinase A by providing a ligand for an allosteric binding site in the alpha-kinase domain.
Crawley SW, Gharaei MS, Ye Q, Yang Y, Raveh B, London N, Schueler-Furman O, Jia Z, Côté GP. Crawley SW, et al. Among authors: raveh b. J Biol Chem. 2011 Jan 28;286(4):2607-16. doi: 10.1074/jbc.M110.177014. Epub 2010 Nov 11. J Biol Chem. 2011. PMID: 21071445 Free PMC article.
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