Re A - Search Results

1

Software for the Integration of Multiomics Experiments in Bioconductor.

Ramos M, Schiffer L, Re A, Azhar R, Basunia A, Rodriguez C, Chan T, Chapman P, Davis SR, Gomez-Cabrero D, Culhane AC, Haibe-Kains B, Hansen KD, Kodali H, Louis MS, Mer AS, Riester M, Morgan M, Carey V, Waldron L. Ramos M, et al. Among authors: re a. Cancer Res. 2017 Nov 1;77(21):e39-e42. doi: 10.1158/0008-5472.CAN-17-0344. Cancer Res. 2017. PMID: 29092936 Free PMC article.

2

Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells.

Re A, Workman CT, Waldron L, Quattrone A, Brunak S. Re A, et al. Stem Cell Res. 2014 Sep;13(2):316-28. doi: 10.1016/j.scr.2014.07.008. Epub 2014 Aug 4. Stem Cell Res. 2014. PMID: 25173649 Free article.

3

Public data and open source tools for multi-assay genomic investigation of disease.

Kannan L, Ramos M, Re A, El-Hachem N, Safikhani Z, Gendoo DM, Davis S, Gomez-Cabrero D, Castelo R, Hansen KD, Carey VJ, Morgan M, Culhane AC, Haibe-Kains B, Waldron L. Kannan L, et al. Among authors: re a. Brief Bioinform. 2016 Jul;17(4):603-15. doi: 10.1093/bib/bbv080. Epub 2015 Oct 12. Brief Bioinform. 2016. PMID: 26463000 Free PMC article. Review.

4

Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites.

Re A, Waldron L, Quattrone A. Re A, et al. PLoS Comput Biol. 2016 Dec 6;12(12):e1005198. doi: 10.1371/journal.pcbi.1005198. eCollection 2016 Dec. PLoS Comput Biol. 2016. PMID: 27923063 Free PMC article.

5

Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human.

Re A, Corá D, Taverna D, Caselle M. Re A, et al. Mol Biosyst. 2009 Aug;5(8):854-67. doi: 10.1039/b900177h. Epub 2009 Jun 19. Mol Biosyst. 2009. PMID: 19603121 Free PMC article.

6

On TD-WGcluster: Theoretical Foundations and Guidelines for the User.

Re A, Lecca P. Re A, et al. Methods Mol Biol. 2020;2074:233-262. doi: 10.1007/978-1-4939-9873-9_17. Methods Mol Biol. 2020. PMID: 31583642

7

AURA: Atlas of UTR Regulatory Activity.

Dassi E, Malossini A, Re A, Mazza T, Tebaldi T, Caputi L, Quattrone A. Dassi E, et al. Among authors: re a. Bioinformatics. 2012 Jan 1;28(1):142-4. doi: 10.1093/bioinformatics/btr608. Epub 2011 Nov 4. Bioinformatics. 2012. PMID: 22057158

8

Segmental chromosome aberrations converge on overexpression of mitotic spindle regulatory genes in high-risk neuroblastoma.

Ooi WF, Re A, Sidarovich V, Canella V, Arseni N, Adami V, Guarguaglini G, Giubettini M, Scaruffi P, Stigliani S, Lavia P, Tonini GP, Quattrone A. Ooi WF, et al. Among authors: re a. Genes Chromosomes Cancer. 2012 Jun;51(6):545-56. doi: 10.1002/gcc.21940. Epub 2012 Feb 15. Genes Chromosomes Cancer. 2012. PMID: 22337647

9

Widespread uncoupling between transcriptome and translatome variations after a stimulus in mammalian cells.

Tebaldi T, Re A, Viero G, Pegoretti I, Passerini A, Blanzieri E, Quattrone A. Tebaldi T, et al. Among authors: re a. BMC Genomics. 2012 Jun 6;13:220. doi: 10.1186/1471-2164-13-220. BMC Genomics. 2012. PMID: 22672192 Free PMC article.

10

Increased frequency of minimal homozygous deletions is associated with poor prognosis in primary malignant melanoma patients.

Boi S, Tebaldi T, Re A, Cantaloni C, Adami V, Barbareschi M, Cristofolini M, Pasini L, Quattrone A. Boi S, et al. Among authors: re a. Genes Chromosomes Cancer. 2014 Jun;53(6):487-96. doi: 10.1002/gcc.22160. Epub 2014 Feb 24. Genes Chromosomes Cancer. 2014. PMID: 24615732

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