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Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
De Maio N, Shaw LP, Hubbard A, George S, Sanderson ND, Swann J, Wick R, AbuOun M, Stubberfield E, Hoosdally SJ, Crook DW, Peto TEA, Sheppard AE, Bailey MJ, Read DS, Anjum MF, Walker AS, Stoesser N, On Behalf Of The Rehab Consortium. De Maio N, et al. Among authors: read ds. Microb Genom. 2019 Sep;5(9):e000294. doi: 10.1099/mgen.0.000294. Epub 2019 Aug 30. Microb Genom. 2019. PMID: 31483244 Free PMC article.
Catchment-scale biogeography of riverine bacterioplankton.
Read DS, Gweon HS, Bowes MJ, Newbold LK, Field D, Bailey MJ, Griffiths RI. Read DS, et al. ISME J. 2015 Feb;9(2):516-26. doi: 10.1038/ismej.2014.166. Epub 2014 Sep 19. ISME J. 2015. PMID: 25238398 Free PMC article.
Genomic network analysis of environmental and livestock F-type plasmid populations.
Matlock W, Chau KK, AbuOun M, Stubberfield E, Barker L, Kavanagh J, Pickford H, Gilson D, Smith RP, Gweon HS, Hoosdally SJ, Swann J, Sebra R, Bailey MJ, Peto TEA, Crook DW, Anjum MF, Read DS, Walker AS, Stoesser N, Shaw LP; REHAB consortium. Matlock W, et al. Among authors: read ds. ISME J. 2021 Aug;15(8):2322-2335. doi: 10.1038/s41396-021-00926-w. Epub 2021 Mar 1. ISME J. 2021. PMID: 33649550 Free PMC article.
Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae.
Shaw LP, Chau KK, Kavanagh J, AbuOun M, Stubberfield E, Gweon HS, Barker L, Rodger G, Bowes MJ, Hubbard ATM, Pickford H, Swann J, Gilson D, Smith RP, Hoosdally SJ, Sebra R, Brett H, Peto TEA, Bailey MJ, Crook DW, Read DS, Anjum MF, Walker AS, Stoesser N; REHAB consortium. Shaw LP, et al. Among authors: read ds. Sci Adv. 2021 Apr 9;7(15):eabe3868. doi: 10.1126/sciadv.abe3868. Print 2021 Apr. Sci Adv. 2021. PMID: 33837077 Free PMC article.
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
Gweon HS, Shaw LP, Swann J, De Maio N, AbuOun M, Niehus R, Hubbard ATM, Bowes MJ, Bailey MJ, Peto TEA, Hoosdally SJ, Walker AS, Sebra RP, Crook DW, Anjum MF, Read DS, Stoesser N; REHAB consortium. Gweon HS, et al. Among authors: read ds. Environ Microbiome. 2019 Oct 24;14(1):7. doi: 10.1186/s40793-019-0347-1. Environ Microbiome. 2019. PMID: 33902704 Free PMC article.
A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage.
AbuOun M, Jones H, Stubberfield E, Gilson D, Shaw LP, Hubbard ATM, Chau KK, Sebra R, Peto TEA, Crook DW, Read DS, Gweon HS, Walker AS, Stoesser N, Smith RP, Anjum MF, On Behalf Of The Rehab Consortium. AbuOun M, et al. Among authors: read ds. Microb Genom. 2021 Oct;7(10):000630. doi: 10.1099/mgen.0.000630. Microb Genom. 2021. PMID: 34609275 Free PMC article.
66 results