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Phaser crystallographic software.
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. McCoy AJ, et al. J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13. J Appl Crystallogr. 2007. PMID: 19461840 Free PMC article.
PHENIX: building new software for automated crystallographic structure determination.
Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC. Adams PD, et al. Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1948-54. doi: 10.1107/s0907444902016657. Epub 2002 Oct 21. Acta Crystallogr D Biol Crystallogr. 2002. PMID: 12393927
Using SAD data in Phaser.
Read RJ, McCoy AJ. Read RJ, et al. Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):338-44. doi: 10.1107/S0907444910051371. Epub 2011 Mar 5. Acta Crystallogr D Biol Crystallogr. 2011. PMID: 21460452 Free PMC article.
Phaser.MRage: automated molecular replacement.
Bunkóczi G, Echols N, McCoy AJ, Oeffner RD, Adams PD, Read RJ. Bunkóczi G, et al. Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2276-86. doi: 10.1107/S0907444913022750. Epub 2013 Oct 18. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 24189240 Free PMC article. Review.
Measuring and using information gained by observing diffraction data.
Read RJ, Oeffner RD, McCoy AJ. Read RJ, et al. Acta Crystallogr D Struct Biol. 2020 Mar 1;76(Pt 3):238-247. doi: 10.1107/S2059798320001588. Epub 2020 Feb 25. Acta Crystallogr D Struct Biol. 2020. PMID: 32133988 Free PMC article.
Improvement of cryo-EM maps by density modification.
Terwilliger TC, Ludtke SJ, Read RJ, Adams PD, Afonine PV. Terwilliger TC, et al. Among authors: read rj. Nat Methods. 2020 Sep;17(9):923-927. doi: 10.1038/s41592-020-0914-9. Epub 2020 Aug 17. Nat Methods. 2020. PMID: 32807957
Application of the complex multivariate normal distribution to crystallographic methods with insights into multiple isomorphous replacement phasing.
Pannu NS, McCoy AJ, Read RJ. Pannu NS, et al. Acta Crystallogr D Biol Crystallogr. 2003 Oct;59(Pt 10):1801-8. doi: 10.1107/s090744490301936x. Epub 2003 Sep 19. Acta Crystallogr D Biol Crystallogr. 2003. PMID: 14501121
Graphical tools for macromolecular crystallography in PHENIX.
Echols N, Grosse-Kunstleve RW, Afonine PV, Bunkóczi G, Chen VB, Headd JJ, McCoy AJ, Moriarty NW, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Adams PD. Echols N, et al. J Appl Crystallogr. 2012 Jun 1;45(Pt 3):581-586. doi: 10.1107/S0021889812017293. Epub 2012 May 16. J Appl Crystallogr. 2012. PMID: 22675231 Free PMC article.
Crystallography & NMR system: A new software suite for macromolecular structure determination.
Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Brünger AT, et al. Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21. doi: 10.1107/s0907444998003254. Acta Crystallogr D Biol Crystallogr. 1998. PMID: 9757107
Recent developments in the PHENIX software for automated crystallographic structure determination.
Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC. Adams PD, et al. J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):53-5. doi: 10.1107/s0909049503024130. Epub 2003 Nov 28. J Synchrotron Radiat. 2004. PMID: 14646133
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