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GenePattern 2.0.
Reich M, Liefeld T, Gould J, Lerner J, Tamayo P, Mesirov JP. Reich M, et al. Nat Genet. 2006 May;38(5):500-1. doi: 10.1038/ng0506-500. Nat Genet. 2006. PMID: 16642009 No abstract available.
Using GenePattern for gene expression analysis.
Kuehn H, Liberzon A, Reich M, Mesirov JP. Kuehn H, et al. Among authors: reich m. Curr Protoc Bioinformatics. 2008 Jun;Chapter 7:Unit 7.12. doi: 10.1002/0471250953.bi0712s22. Curr Protoc Bioinformatics. 2008. PMID: 18551415 Free PMC article. Review.
The GenePattern Notebook Environment.
Reich M, Tabor T, Liefeld T, Thorvaldsdóttir H, Hill B, Tamayo P, Mesirov JP. Reich M, et al. Cell Syst. 2017 Aug 23;5(2):149-151.e1. doi: 10.1016/j.cels.2017.07.003. Epub 2017 Aug 16. Cell Syst. 2017. PMID: 28822753 Free PMC article.
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.
Qu K, Garamszegi S, Wu F, Thorvaldsdottir H, Liefeld T, Ocana M, Borges-Rivera D, Pochet N, Robinson JT, Demchak B, Hull T, Ben-Artzi G, Blankenberg D, Barber GP, Lee BT, Kuhn RM, Nekrutenko A, Segal E, Ideker T, Reich M, Regev A, Chang HY, Mesirov JP. Qu K, et al. Among authors: reich m. Nat Methods. 2016 Mar;13(3):245-247. doi: 10.1038/nmeth.3732. Epub 2016 Jan 18. Nat Methods. 2016. PMID: 26780094 Free PMC article.
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
Barretina J, Caponigro G, Stransky N, Venkatesan K, Margolin AA, Kim S, Wilson CJ, Lehár J, Kryukov GV, Sonkin D, Reddy A, Liu M, Murray L, Berger MF, Monahan JE, Morais P, Meltzer J, Korejwa A, Jané-Valbuena J, Mapa FA, Thibault J, Bric-Furlong E, Raman P, Shipway A, Engels IH, Cheng J, Yu GK, Yu J, Aspesi P Jr, de Silva M, Jagtap K, Jones MD, Wang L, Hatton C, Palescandolo E, Gupta S, Mahan S, Sougnez C, Onofrio RC, Liefeld T, MacConaill L, Winckler W, Reich M, Li N, Mesirov JP, Gabriel SB, Getz G, Ardlie K, Chan V, Myer VE, Weber BL, Porter J, Warmuth M, Finan P, Harris JL, Meyerson M, Golub TR, Morrissey MP, Sellers WR, Schlegel R, Garraway LA. Barretina J, et al. Among authors: reich m. Nature. 2012 Mar 28;483(7391):603-7. doi: 10.1038/nature11003. Nature. 2012. PMID: 22460905 Free PMC article.
Disease gene discovery through integrative genomics.
Giallourakis C, Henson C, Reich M, Xie X, Mootha VK. Giallourakis C, et al. Among authors: reich m. Annu Rev Genomics Hum Genet. 2005;6:381-406. doi: 10.1146/annurev.genom.6.080604.162234. Annu Rev Genomics Hum Genet. 2005. PMID: 16124867 Review.
[No authors listed] [No authors listed] PMID: 25279140
Cytoscape: the network visualization tool for GenomeSpace workflows.
Demchak B, Hull T, Reich M, Liefeld T, Smoot M, Ideker T, Mesirov JP. Demchak B, et al. Among authors: reich m. F1000Res. 2014 Jul 1;3:151. doi: 10.12688/f1000research.4492.2. eCollection 2014. F1000Res. 2014. PMID: 25165537 Free PMC article.
RNA-SeQC: RNA-seq metrics for quality control and process optimization.
DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G. DeLuca DS, et al. Among authors: reich m. Bioinformatics. 2012 Jun 1;28(11):1530-2. doi: 10.1093/bioinformatics/bts196. Epub 2012 Apr 25. Bioinformatics. 2012. PMID: 22539670 Free PMC article.
637 results