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SNIT: SNP identification for strain typing.
Vijaya Satya R, Zavaljevski N, Reifman J. Vijaya Satya R, et al. Among authors: reifman j. Source Code Biol Med. 2011 Sep 8;6:14. doi: 10.1186/1751-0473-6-14. Source Code Biol Med. 2011. PMID: 21902825 Free PMC article.
Error bounds for data-driven models of dynamical systems.
Oleng' NO, Gribok A, Reifman J. Oleng' NO, et al. Among authors: reifman j. Comput Biol Med. 2007 May;37(5):670-9. doi: 10.1016/j.compbiomed.2006.06.005. Epub 2006 Aug 8. Comput Biol Med. 2007. PMID: 16895726
Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.
Tembe W, Zavaljevski N, Bode E, Chase C, Geyer J, Wasieloski L, Benson G, Reifman J. Tembe W, et al. Among authors: reifman j. Bioinformatics. 2007 Jan 1;23(1):5-13. doi: 10.1093/bioinformatics/btl549. Epub 2006 Oct 26. Bioinformatics. 2007. PMID: 17068088
A high-throughput pipeline for designing microarray-based pathogen diagnostic assays.
Vijaya Satya R, Zavaljevski N, Kumar K, Reifman J. Vijaya Satya R, et al. Among authors: reifman j. BMC Bioinformatics. 2008 Apr 10;9:185. doi: 10.1186/1471-2105-9-185. BMC Bioinformatics. 2008. PMID: 18402679 Free PMC article.
In silico microarray probe design for diagnosis of multiple pathogens.
Vijaya Satya R, Zavaljevski N, Kumar K, Bode E, Padilla S, Wasieloski L, Geyer J, Reifman J. Vijaya Satya R, et al. Among authors: reifman j. BMC Genomics. 2008 Oct 21;9:496. doi: 10.1186/1471-2164-9-496. BMC Genomics. 2008. PMID: 18940003 Free PMC article.
A high-throughput pipeline for the design of real-time PCR signatures.
Vijaya Satya R, Kumar K, Zavaljevski N, Reifman J. Vijaya Satya R, et al. Among authors: reifman j. BMC Bioinformatics. 2010 Jun 23;11:340. doi: 10.1186/1471-2105-11-340. BMC Bioinformatics. 2010. PMID: 20573238 Free PMC article.
AGeS: a software system for microbial genome sequence annotation.
Kumar K, Desai V, Cheng L, Khitrov M, Grover D, Satya RV, Yu C, Zavaljevski N, Reifman J. Kumar K, et al. Among authors: reifman j. PLoS One. 2011 Mar 7;6(3):e17469. doi: 10.1371/journal.pone.0017469. PLoS One. 2011. PMID: 21408217 Free PMC article.
QuartetS: a fast and accurate algorithm for large-scale orthology detection.
Yu C, Zavaljevski N, Desai V, Reifman J. Yu C, et al. Among authors: reifman j. Nucleic Acids Res. 2011 Jul;39(13):e88. doi: 10.1093/nar/gkr308. Epub 2011 May 13. Nucleic Acids Res. 2011. PMID: 21572104 Free PMC article.
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