Reimand J - Search Results

1

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods.

Adler P, Kolde R, Kull M, Tkachenko A, Peterson H, Reimand J, Vilo J. Adler P, et al. Among authors: reimand j. Genome Biol. 2009;10(12):R139. doi: 10.1186/gb-2009-10-12-r139. Epub 2009 Dec 4. Genome Biol. 2009. PMID: 19961599 Free PMC article.

2

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

Reimand J, Kull M, Peterson H, Hansen J, Vilo J. Reimand J, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. doi: 10.1093/nar/gkm226. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478515 Free PMC article.

3

KEGGanim: pathway animations for high-throughput data.

Adler P, Reimand J, Jänes J, Kolde R, Peterson H, Vilo J. Adler P, et al. Among authors: reimand j. Bioinformatics. 2008 Feb 15;24(4):588-90. doi: 10.1093/bioinformatics/btm581. Epub 2007 Dec 1. Bioinformatics. 2008. PMID: 18056068

4

Ranking genes by their co-expression to subsets of pathway members.

Adler P, Peterson H, Agius P, Reimand J, Vilo J. Adler P, et al. Among authors: reimand j. Ann N Y Acad Sci. 2009 Mar;1158:1-13. doi: 10.1111/j.1749-6632.2008.03747.x. Ann N Y Acad Sci. 2009. PMID: 19348627

5

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.

Reimand J, Tooming L, Peterson H, Adler P, Vilo J. Reimand J, et al. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W452-9. doi: 10.1093/nar/gkn230. Epub 2008 May 6. Nucleic Acids Res. 2008. PMID: 18460544 Free PMC article.

6

VisHiC--hierarchical functional enrichment analysis of microarray data.

Krushevskaya D, Peterson H, Reimand J, Kull M, Vilo J. Krushevskaya D, et al. Among authors: reimand j. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W587-92. doi: 10.1093/nar/gkp435. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483095 Free PMC article.

7

g:Profiler--a web server for functional interpretation of gene lists (2011 update).

Reimand J, Arak T, Vilo J. Reimand J, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W307-15. doi: 10.1093/nar/gkr378. Epub 2011 Jun 6. Nucleic Acids Res. 2011. PMID: 21646343 Free PMC article.

8

g:Profiler-a web server for functional interpretation of gene lists (2016 update).

Reimand J, Arak T, Adler P, Kolberg L, Reisberg S, Peterson H, Vilo J. Reimand J, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W83-9. doi: 10.1093/nar/gkw199. Epub 2016 Apr 20. Nucleic Acids Res. 2016. PMID: 27098042 Free PMC article.

9

The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation.

Schulz H, Kolde R, Adler P, Aksoy I, Anastassiadis K, Bader M, Billon N, Boeuf H, Bourillot PY, Buchholz F, Dani C, Doss MX, Forrester L, Gitton M, Henrique D, Hescheler J, Himmelbauer H, Hübner N, Karantzali E, Kretsovali A, Lubitz S, Pradier L, Rai M, Reimand J, Rolletschek A, Sachinidis A, Savatier P, Stewart F, Storm MP, Trouillas M, Vilo J, Welham MJ, Winkler J, Wobus AM, Hatzopoulos AK; Functional Genomics in Embryonic Stem Cells Consortium. Schulz H, et al. Among authors: reimand j. PLoS One. 2009 Sep 3;4(9):e6804. doi: 10.1371/journal.pone.0006804. PLoS One. 2009. PMID: 19727443 Free PMC article.

10

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development.

Billon N, Kolde R, Reimand J, Monteiro MC, Kull M, Peterson H, Tretyakov K, Adler P, Wdziekonski B, Vilo J, Dani C. Billon N, et al. Among authors: reimand j. Genome Biol. 2010;11(8):R80. doi: 10.1186/gb-2010-11-8-r80. Epub 2010 Aug 3. Genome Biol. 2010. PMID: 20678241 Free PMC article.

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