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Phylotyping and functional analysis of two ancient human microbiomes.
Tito RY, Macmil S, Wiley G, Najar F, Cleeland L, Qu C, Wang P, Romagne F, Leonard S, Ruiz AJ, Reinhard K, Roe BA, Lewis CM Jr. Tito RY, et al. PLoS One. 2008;3(11):e3703. doi: 10.1371/journal.pone.0003703. Epub 2008 Nov 11. PLoS One. 2008. PMID: 19002248 Free PMC article.
Insights from characterizing extinct human gut microbiomes.
Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM Jr. Tito RY, et al. PLoS One. 2012;7(12):e51146. doi: 10.1371/journal.pone.0051146. Epub 2012 Dec 12. PLoS One. 2012. PMID: 23251439 Free PMC article.
CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content.
Borry M, Cordova B, Perri A, Wibowo M, Prasad Honap T, Ko J, Yu J, Britton K, Girdland-Flink L, Power RC, Stuijts I, Salazar-García DC, Hofman C, Hagan R, Samdapawindé Kagoné T, Meda N, Carabin H, Jacobson D, Reinhard K, Lewis C, Kostic A, Jeong C, Herbig A, Hübner A, Warinner C. Borry M, et al. PeerJ. 2020 Apr 17;8:e9001. doi: 10.7717/peerj.9001. eCollection 2020. PeerJ. 2020. PMID: 32337106 Free PMC article.
Reconstruction of ancient microbial genomes from the human gut.
Wibowo MC, Yang Z, Borry M, Hübner A, Huang KD, Tierney BT, Zimmerman S, Barajas-Olmos F, Contreras-Cubas C, García-Ortiz H, Martínez-Hernández A, Luber JM, Kirstahler P, Blohm T, Smiley FE, Arnold R, Ballal SA, Pamp SJ, Russ J, Maixner F, Rota-Stabelli O, Segata N, Reinhard K, Orozco L, Warinner C, Snow M, LeBlanc S, Kostic AD. Wibowo MC, et al. Nature. 2021 Jun;594(7862):234-239. doi: 10.1038/s41586-021-03532-0. Epub 2021 May 12. Nature. 2021. PMID: 33981035 Free PMC article.
82 results