Rice JJ - Search Results

1

Formation of regulatory patterns during signal propagation in a Mammalian cellular network.

Ma'ayan A, Jenkins SL, Neves S, Hasseldine A, Grace E, Dubin-Thaler B, Eungdamrong NJ, Weng G, Ram PT, Rice JJ, Kershenbaum A, Stolovitzky GA, Blitzer RD, Iyengar R. Ma'ayan A, et al. Among authors: rice jj. Science. 2005 Aug 12;309(5737):1078-83. doi: 10.1126/science.1108876. Science. 2005. PMID: 16099987 Free PMC article.

2

Lasting impressions: motifs in protein-protein maps may provide footprints of evolutionary events.

Rice JJ, Kershenbaum A, Stolovitzky G. Rice JJ, et al. Proc Natl Acad Sci U S A. 2005 Mar 1;102(9):3173-4. doi: 10.1073/pnas.0500130102. Epub 2005 Feb 22. Proc Natl Acad Sci U S A. 2005. PMID: 15728355 Free PMC article. No abstract available.

3

Reconstructing biological networks using conditional correlation analysis.

Rice JJ, Tu Y, Stolovitzky G. Rice JJ, et al. Bioinformatics. 2005 Mar;21(6):765-73. doi: 10.1093/bioinformatics/bti064. Epub 2004 Oct 14. Bioinformatics. 2005. PMID: 15486043

4

A plausible model for the digital response of p53 to DNA damage.

Ma L, Wagner J, Rice JJ, Hu W, Levine AJ, Stolovitzky GA. Ma L, et al. Among authors: rice jj. Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14266-71. doi: 10.1073/pnas.0501352102. Epub 2005 Sep 26. Proc Natl Acad Sci U S A. 2005. PMID: 16186499 Free PMC article.

5

p53-Mdm2 loop controlled by a balance of its feedback strength and effective dampening using ATM and delayed feedback.

Wagner J, Ma L, Rice JJ, Hu W, Levine AJ, Stolovitzky GA. Wagner J, et al. Among authors: rice jj. Syst Biol (Stevenage). 2005 Sep;152(3):109-18. doi: 10.1049/ip-syb:20050025. Syst Biol (Stevenage). 2005. PMID: 16986275

6

Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data.

Lepre J, Rice JJ, Tu Y, Stolovitzky G. Lepre J, et al. Among authors: rice jj. Bioinformatics. 2004 May 1;20(7):1033-44. doi: 10.1093/bioinformatics/bth035. Epub 2004 Feb 5. Bioinformatics. 2004. PMID: 14764572

7

Ising model of cardiac thin filament activation with nearest-neighbor cooperative interactions.

Rice JJ, Stolovitzky G, Tu Y, de Tombe PP. Rice JJ, et al. Biophys J. 2003 Feb;84(2 Pt 1):897-909. doi: 10.1016/S0006-3495(03)74907-8. Biophys J. 2003. PMID: 12547772 Free PMC article.

8

The self-assessment trap: can we all be better than average?

Norel R, Rice JJ, Stolovitzky G. Norel R, et al. Among authors: rice jj. Mol Syst Biol. 2011 Oct 11;7:537. doi: 10.1038/msb.2011.70. Mol Syst Biol. 2011. PMID: 21988833 Free PMC article. No abstract available.

9

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.

Meyer P, Hoeng J, Rice JJ, Norel R, Sprengel J, Stolle K, Bonk T, Corthesy S, Royyuru A, Peitsch MC, Stolovitzky G. Meyer P, et al. Among authors: rice jj. Bioinformatics. 2012 May 1;28(9):1193-201. doi: 10.1093/bioinformatics/bts116. Epub 2012 Mar 14. Bioinformatics. 2012. PMID: 22423044 Free PMC article. Review.

10

A crowd-sourcing approach for the construction of species-specific cell signaling networks.

Bilal E, Sakellaropoulos T, Melas IN, Messinis DE, Belcastro V, Rhrissorrakrai K, Meyer P, Norel R, Iskandar A, Blaese E, Rice JJ, Peitsch MC, Hoeng J, Stolovitzky G, Alexopoulos LG, Poussin C; Challenge Participants. Bilal E, et al. Among authors: rice jj. Bioinformatics. 2015 Feb 15;31(4):484-91. doi: 10.1093/bioinformatics/btu659. Epub 2014 Oct 7. Bioinformatics. 2015. PMID: 25294919 Free PMC article.

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