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Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content.
Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS. Springer NM, et al. Among authors: richmond t. PLoS Genet. 2009 Nov;5(11):e1000734. doi: 10.1371/journal.pgen.1000734. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19956538 Free PMC article.
Genetic perturbation of the maize methylome.
Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, Burgess DL, Richmond TA, McGinnis KM, Meeley RB, Danilevskaya ON, Vaughn MW, Kaeppler SM, Jeddeloh JA, Springer NM. Li Q, et al. Plant Cell. 2014 Dec;26(12):4602-16. doi: 10.1105/tpc.114.133140. Epub 2014 Dec 19. Plant Cell. 2014. PMID: 25527708 Free PMC article.
Changes in genome content generated via segregation of non-allelic homologs.
Liu S, Ying K, Yeh CT, Yang J, Swanson-Wagner R, Wu W, Richmond T, Gerhardt DJ, Lai J, Springer N, Nettleton D, Jeddeloh JA, Schnable PS. Liu S, et al. Among authors: richmond t. Plant J. 2012 Nov;72(3):390-9. doi: 10.1111/j.1365-313X.2012.05087.x. Epub 2012 Aug 30. Plant J. 2012. PMID: 22731681 Free article.
Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.
Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, Muehlbauer GJ, Stein N. Muñoz-Amatriaín M, et al. Among authors: richmond ta. Genome Biol. 2013 Jun 12;14(6):R58. doi: 10.1186/gb-2013-14-6-r58. Genome Biol. 2013. PMID: 23758725 Free PMC article.
Repeat subtraction-mediated sequence capture from a complex genome.
Fu Y, Springer NM, Gerhardt DJ, Ying K, Yeh CT, Wu W, Swanson-Wagner R, D'Ascenzo M, Millard T, Freeberg L, Aoyama N, Kitzman J, Burgess D, Richmond T, Albert TJ, Barbazuk WB, Jeddeloh JA, Schnable PS. Fu Y, et al. Among authors: richmond t. Plant J. 2010 Jun 1;62(5):898-909. doi: 10.1111/j.1365-313X.2010.04196.x. Epub 2010 Mar 4. Plant J. 2010. PMID: 20230488 Free article.
Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.
Li Q, Suzuki M, Wendt J, Patterson N, Eichten SR, Hermanson PJ, Green D, Jeddeloh J, Richmond T, Rosenbaum H, Burgess D, Springer NM, Greally JM. Li Q, et al. Among authors: richmond t. Nucleic Acids Res. 2015 Jul 13;43(12):e81. doi: 10.1093/nar/gkv244. Epub 2015 Mar 26. Nucleic Acids Res. 2015. PMID: 25813045 Free PMC article.
Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.
Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N. Mascher M, et al. Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24. Plant J. 2013. PMID: 23889683 Free PMC article.
437 results