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94 results
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Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast.
Ringnér M, Krogh M. Ringnér M, et al. PLoS Comput Biol. 2005 Dec;1(7):e72. doi: 10.1371/journal.pcbi.0010072. Epub 2005 Dec 9. PLoS Comput Biol. 2005. PMID: 16355254 Free PMC article.
An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cells.
Holm K, Staaf J, Lauss M, Aine M, Lindgren D, Bendahl PO, Vallon-Christersson J, Barkardottir RB, Höglund M, Borg Å, Jönsson G, Ringnér M. Holm K, et al. Among authors: ringner m. Breast Cancer Res. 2016 Feb 29;18(1):27. doi: 10.1186/s13058-016-0685-5. Breast Cancer Res. 2016. PMID: 26923702 Free PMC article.
Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis.
Liu Y, Ringnér M. Liu Y, et al. Among authors: ringner m. Genome Biol. 2007;8(5):R77. doi: 10.1186/gb-2007-8-5-r77. Genome Biol. 2007. PMID: 17498287 Free PMC article.
Normalization of array-CGH data: influence of copy number imbalances.
Staaf J, Jönsson G, Ringnér M, Vallon-Christersson J. Staaf J, et al. Among authors: ringner m. BMC Genomics. 2007 Oct 22;8:382. doi: 10.1186/1471-2164-8-382. BMC Genomics. 2007. PMID: 17953745 Free PMC article.
Genomic and transcriptional alterations in lung adenocarcinoma in relation to smoking history.
Karlsson A, Ringnér M, Lauss M, Botling J, Micke P, Planck M, Staaf J. Karlsson A, et al. Among authors: ringner m. Clin Cancer Res. 2014 Sep 15;20(18):4912-24. doi: 10.1158/1078-0432.CCR-14-0246. Epub 2014 Jul 18. Clin Cancer Res. 2014. PMID: 25037737
High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer.
Staaf J, Jönsson G, Ringnér M, Vallon-Christersson J, Grabau D, Arason A, Gunnarsson H, Agnarsson BA, Malmström PO, Johannsson OT, Loman N, Barkardottir RB, Borg A. Staaf J, et al. Among authors: ringner m. Breast Cancer Res. 2010;12(3):R25. doi: 10.1186/bcr2568. Epub 2010 May 6. Breast Cancer Res. 2010. PMID: 20459607 Free PMC article.
Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs.
Veerla S, Ringnér M, Höglund M. Veerla S, et al. Among authors: ringner m. BMC Genomics. 2010 Mar 1;11:145. doi: 10.1186/1471-2164-11-145. BMC Genomics. 2010. PMID: 20193056 Free PMC article.
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.
Staaf J, Vallon-Christersson J, Lindgren D, Juliusson G, Rosenquist R, Höglund M, Borg A, Ringnér M. Staaf J, et al. Among authors: ringner m. BMC Bioinformatics. 2008 Oct 2;9:409. doi: 10.1186/1471-2105-9-409. BMC Bioinformatics. 2008. PMID: 18831757 Free PMC article.
High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.
Jönsson G, Staaf J, Olsson E, Heidenblad M, Vallon-Christersson J, Osoegawa K, de Jong P, Oredsson S, Ringnér M, Höglund M, Borg A. Jönsson G, et al. Among authors: ringner m. Genes Chromosomes Cancer. 2007 Jun;46(6):543-58. doi: 10.1002/gcc.20438. Genes Chromosomes Cancer. 2007. PMID: 17334996
Distinct genomic profiles in hereditary breast tumors identified by array-based comparative genomic hybridization.
Jönsson G, Naylor TL, Vallon-Christersson J, Staaf J, Huang J, Ward MR, Greshock JD, Luts L, Olsson H, Rahman N, Stratton M, Ringnér M, Borg A, Weber BL. Jönsson G, et al. Among authors: ringner m. Cancer Res. 2005 Sep 1;65(17):7612-21. doi: 10.1158/0008-5472.CAN-05-0570. Cancer Res. 2005. PMID: 16140926
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