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127 results
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Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum.
Kazanov MD, Li X, Gelfand MS, Osterman AL, Rodionov DA. Kazanov MD, et al. Among authors: rodionov da. Nucleic Acids Res. 2013 Jan;41(2):790-803. doi: 10.1093/nar/gks1184. Epub 2012 Dec 2. Nucleic Acids Res. 2013. PMID: 23209028 Free PMC article.
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.
Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS. Vitreschak AG, et al. Among authors: rodionov da. Nucleic Acids Res. 2002 Jul 15;30(14):3141-51. doi: 10.1093/nar/gkf433. Nucleic Acids Res. 2002. PMID: 12136096 Free PMC article.
Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. Rodionov DA, et al. Nucleic Acids Res. 2003 Dec 1;31(23):6748-57. doi: 10.1093/nar/gkg900. Nucleic Acids Res. 2003. PMID: 14627808 Free PMC article.
Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems.
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. Rodionov DA, et al. Nucleic Acids Res. 2004 Jun 23;32(11):3340-53. doi: 10.1093/nar/gkh659. Print 2004. Nucleic Acids Res. 2004. PMID: 15215334 Free PMC article.
Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: evidence for a novel group of ATP-binding cassette transporters.
Rodionov DA, Hebbeln P, Gelfand MS, Eitinger T. Rodionov DA, et al. J Bacteriol. 2006 Jan;188(1):317-27. doi: 10.1128/JB.188.1.317-327.2006. J Bacteriol. 2006. PMID: 16352848 Free PMC article.
Computational identification of BioR, a transcriptional regulator of biotin metabolism in Alphaproteobacteria, and of its binding signal.
Rodionov DA, Gelfand MS. Rodionov DA, et al. FEMS Microbiol Lett. 2006 Feb;255(1):102-7. doi: 10.1111/j.1574-6968.2005.00070.x. FEMS Microbiol Lett. 2006. PMID: 16436068
Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis.
Yang C, Rodionov DA, Li X, Laikova ON, Gelfand MS, Zagnitko OP, Romine MF, Obraztsova AY, Nealson KH, Osterman AL. Yang C, et al. Among authors: rodionov da. J Biol Chem. 2006 Oct 6;281(40):29872-85. doi: 10.1074/jbc.M605052200. Epub 2006 Jul 20. J Biol Chem. 2006. PMID: 16857666
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.
McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, Osterman A, Paarmann D, Paczian T, Parrello B, Pusch GD, Rodionov DA, Shi X, Vassieva O, Vonstein V, Zagnitko O, Xia F, Zinner J, Overbeek R, Stevens R. McNeil LK, et al. Among authors: rodionov da. Nucleic Acids Res. 2007 Jan;35(Database issue):D347-53. doi: 10.1093/nar/gkl947. Epub 2006 Dec 1. Nucleic Acids Res. 2007. PMID: 17145713 Free PMC article.
Genomic identification and in vitro reconstitution of a complete biosynthetic pathway for the osmolyte di-myo-inositol-phosphate.
Rodionov DA, Kurnasov OV, Stec B, Wang Y, Roberts MF, Osterman AL. Rodionov DA, et al. Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4279-84. doi: 10.1073/pnas.0609279104. Epub 2007 Mar 2. Proc Natl Acad Sci U S A. 2007. PMID: 17360515 Free PMC article.
Crystal structure of TM1030 from Thermotoga maritima at 2.3 A resolution reveals molecular details of its transcription repressor function.
Premkumar L, Rife CL, Sri Krishna S, McMullan D, Miller MD, Abdubek P, Ambing E, Astakhova T, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Floyd R, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kovarik JS, Kreusch A, Levin I, McPhillips TM, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rezezadeh F, Rodionov D, Schwarzenbacher R, Spraggon G, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. Premkumar L, et al. Proteins. 2007 Jul 1;68(1):418-24. doi: 10.1002/prot.21436. Proteins. 2007. PMID: 17444523 No abstract available.
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