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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.
Novichkov PS, Brettin TS, Novichkova ES, Dehal PS, Arkin AP, Dubchak I, Rodionov DA. Novichkov PS, et al. Among authors: Rodionov DA. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W604-8. doi: 10.1093/nar/gks562. Epub 2012 Jun 14. Nucleic Acids Res. 2012. PMID: 22700702 Free PMC article.
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.
Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I. Novichkov PS, et al. Among authors: Rodionov DA. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531. Epub 2010 Jun 11. Nucleic Acids Res. 2010. PMID: 20542910 Free PMC article.
Comparative genomics and evolution of regulons of the LacI-family transcription factors.
Ravcheev DA, Khoroshkin MS, Laikova ON, Tsoy OV, Sernova NV, Petrova SA, Rakhmaninova AB, Novichkov PS, Gelfand MS, Rodionov DA. Ravcheev DA, et al. Among authors: Rodionov DA. Front Microbiol. 2014 Jun 11;5:294. doi: 10.3389/fmicb.2014.00294. eCollection 2014. Front Microbiol. 2014. PMID: 24966856 Free PMC article.
New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.
Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS. Kazakov AE, et al. Among authors: Rodionov DA. J Bacteriol. 2013 Oct;195(19):4466-75. doi: 10.1128/JB.00679-13. Epub 2013 Aug 2. J Bacteriol. 2013. PMID: 23913324 Free PMC article.
Reconstruction of xylose utilization pathway and regulons in Firmicutes.
Gu Y, Ding Y, Ren C, Sun Z, Rodionov DA, Zhang W, Yang S, Yang C, Jiang W. Gu Y, et al. Among authors: Rodionov DA. BMC Genomics. 2010 Apr 21;11:255. doi: 10.1186/1471-2164-11-255. BMC Genomics. 2010. PMID: 20406496 Free PMC article.
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