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PanDrugs: a novel method to prioritize anticancer drug treatments according to individual genomic data.
Piñeiro-Yáñez E, Reboiro-Jato M, Gómez-López G, Perales-Patón J, Troulé K, Rodríguez JM, Tejero H, Shimamura T, López-Casas PP, Carretero J, Valencia A, Hidalgo M, Glez-Peña D, Al-Shahrour F. Piñeiro-Yáñez E, et al. Among authors: rodriguez jm. Genome Med. 2018 May 31;10(1):41. doi: 10.1186/s13073-018-0546-1. Genome Med. 2018. PMID: 29848362 Free PMC article.
CARGO: a web portal to integrate customized biological information.
Cases I, Pisano DG, Andres E, Carro A, Fernández JM, Gómez-López G, Rodriguez JM, Vera JF, Valencia A, Rojas AM. Cases I, et al. Among authors: rodriguez jm. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W16-20. doi: 10.1093/nar/gkm280. Epub 2007 May 5. Nucleic Acids Res. 2007. PMID: 17483515 Free PMC article.
firestar--advances in the prediction of functionally important residues.
Lopez G, Maietta P, Rodriguez JM, Valencia A, Tress ML. Lopez G, et al. Among authors: rodriguez jm. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W235-41. doi: 10.1093/nar/gkr437. Epub 2011 Jun 14. Nucleic Acids Res. 2011. PMID: 21672959 Free PMC article.
GENCODE: the reference human genome annotation for The ENCODE Project.
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, Hunt T, Kay M, Mukherjee G, Rajan J, Despacio-Reyes G, Saunders G, Steward C, Harte R, Lin M, Howald C, Tanzer A, Derrien T, Chrast J, Walters N, Balasubramanian S, Pei B, Tress M, Rodriguez JM, Ezkurdia I, van Baren J, Brent M, Haussler D, Kellis M, Valencia A, Reymond A, Gerstein M, Guigó R, Hubbard TJ. Harrow J, et al. Among authors: rodriguez jm. Genome Res. 2012 Sep;22(9):1760-74. doi: 10.1101/gr.135350.111. Genome Res. 2012. PMID: 22955987 Free PMC article.
APPRIS: annotation of principal and alternative splice isoforms.
Rodriguez JM, Maietta P, Ezkurdia I, Pietrelli A, Wesselink JJ, Lopez G, Valencia A, Tress ML. Rodriguez JM, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D110-7. doi: 10.1093/nar/gks1058. Epub 2012 Nov 17. Nucleic Acids Res. 2013. PMID: 23161672 Free PMC article.
Most highly expressed protein-coding genes have a single dominant isoform.
Ezkurdia I, Rodriguez JM, Carrillo-de Santa Pau E, Vázquez J, Valencia A, Tress ML. Ezkurdia I, et al. Among authors: rodriguez jm. J Proteome Res. 2015 Apr 3;14(4):1880-7. doi: 10.1021/pr501286b. Epub 2015 Mar 11. J Proteome Res. 2015. PMID: 25732134 Free PMC article.
APPRIS WebServer and WebServices.
Rodriguez JM, Carro A, Valencia A, Tress ML. Rodriguez JM, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W455-9. doi: 10.1093/nar/gkv512. Epub 2015 May 18. Nucleic Acids Res. 2015. PMID: 25990727 Free PMC article.
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