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114 results
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Information theory-based analysis of CYP2C19, CYP2D6 and CYP3A5 splicing mutations.
Rogan PK, Svojanovsky S, Leeder JS. Rogan PK, et al. Pharmacogenetics. 2003 Apr;13(4):207-18. doi: 10.1097/00008571-200304000-00005. Pharmacogenetics. 2003. PMID: 12668917
Development and refinement of pregnane X receptor (PXR) DNA binding site model using information theory: insights into PXR-mediated gene regulation.
Vyhlidal CA, Rogan PK, Leeder JS. Vyhlidal CA, et al. Among authors: rogan pk. J Biol Chem. 2004 Nov 5;279(45):46779-86. doi: 10.1074/jbc.M408395200. Epub 2004 Aug 16. J Biol Chem. 2004. PMID: 15316010
Bipartite pattern discovery by entropy minimization-based multiple local alignment.
Bi C, Rogan PK. Bi C, et al. Among authors: rogan pk. Nucleic Acids Res. 2004 Sep 23;32(17):4979-91. doi: 10.1093/nar/gkh825. Print 2004. Nucleic Acids Res. 2004. PMID: 15388800 Free PMC article.
BIPAD: a web server for modeling bipartite sequence elements.
Bi C, Rogan PK. Bi C, et al. Among authors: rogan pk. BMC Bioinformatics. 2006 Feb 17;7:76. doi: 10.1186/1471-2105-7-76. BMC Bioinformatics. 2006. PMID: 16503993 Free PMC article.
Automated splicing mutation analysis by information theory.
Nalla VK, Rogan PK. Nalla VK, et al. Among authors: rogan pk. Hum Mutat. 2005 Apr;25(4):334-42. doi: 10.1002/humu.20151. Hum Mutat. 2005. PMID: 15776446
Genome-wide prediction, display and refinement of binding sites with information theory-based models.
Gadiraju S, Vyhlidal CA, Leeder JS, Rogan PK. Gadiraju S, et al. Among authors: rogan pk. BMC Bioinformatics. 2003 Sep 8;4:38. doi: 10.1186/1471-2105-4-38. Epub 2003 Sep 8. BMC Bioinformatics. 2003. PMID: 12962546 Free PMC article.
Identification and characterization of novel sequence variations in the cytochrome P4502D6 (CYP2D6) gene in African Americans.
Gaedigk A, Bhathena A, Ndjountché L, Pearce RE, Abdel-Rahman SM, Alander SW, Bradford LD, Rogan PK, Leeder JS. Gaedigk A, et al. Among authors: rogan pk. Pharmacogenomics J. 2005;5(3):173-82. doi: 10.1038/sj.tpj.6500305. Pharmacogenomics J. 2005. PMID: 15768052 Free PMC article.
Exon skipping in IVD RNA processing in isovaleric acidemia caused by point mutations in the coding region of the IVD gene.
Vockley J, Rogan PK, Anderson BD, Willard J, Seelan RS, Smith DI, Liu W. Vockley J, et al. Among authors: rogan pk. Am J Hum Genet. 2000 Feb;66(2):356-67. doi: 10.1086/302751. Am J Hum Genet. 2000. PMID: 10677295 Free PMC article.
Mutations that alter RNA splicing of the human HPRT gene: a review of the spectrum.
O'Neill JP, Rogan PK, Cariello N, Nicklas JA. O'Neill JP, et al. Among authors: rogan pk. Mutat Res. 1998 Nov;411(3):179-214. doi: 10.1016/s1383-5742(98)00013-1. Mutat Res. 1998. PMID: 9804951 Review.
Information analysis of human splice site mutations.
Rogan PK, Faux BM, Schneider TD. Rogan PK, et al. Hum Mutat. 1998;12(3):153-71. doi: 10.1002/(SICI)1098-1004(1998)12:3<153::AID-HUMU3>3.0.CO;2-I. Hum Mutat. 1998. PMID: 9711873
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